HL_7TOS_071

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7TOS|1|23S|A|1614, 7TOS|1|23S|A|1616, 7TOS|1|23S|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_071 not in the Motif Atlas

Geometric match to HL_7RQB_040

Geometric discrepancy: 0.0697

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7TOS|1|23S|C|1612
7TOS|1|23S|G|1613
7TOS|1|23S|A|1614
7TOS|1|23S|C|1615
7TOS|1|23S|A|1616
7TOS|1|23S|C|1617
7TOS|1|23S|A|1618
7TOS|1|23S|G|1619

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L22

50S ribosomal protein L22

Chain L34

50S ribosomal protein L34

Chain PR

PR20, ALS/FTD dipeptide repeat protein