HL_7TQL_003

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7TQL|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1708

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TQL|1|2|G|156
7TQL|1|2|U|157
7TQL|1|2|A|158
7TQL|1|2|A|159
7TQL|1|2|U|160
7TQL|1|2|U|161
7TQL|1|2|C|162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 5B

Chain G

40S ribosomal protein S6

Chain Y

Isoform 3 of 40S ribosomal protein S24