HL_7TQL_012

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

7TQL|1|2|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_012 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.265

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7TQL|1|2|C|539
7TQL|1|2|U|540
7TQL|1|2|U|541
7TQL|1|2|U|542
7TQL|1|2|C|543
7TQL|1|2|G|544

Current chains

Chain 2

18S ribosomal RNA

Nearby chains