HL_7TQL_020

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7TQL|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1841

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7TQL|1|2|G|1054
7TQL|1|2|A|1055
7TQL|1|2|U|1056
7TQL|1|2|C|1057
7TQL|1|2|A|1058
7TQL|1|2|G|1059
7TQL|1|2|A|1060
7TQL|1|2|U|1061
7TQL|1|2|A|1062
7TQL|1|2|C|1063
7TQL|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain P

ribosomal protein uS11

Chain c

40S ribosomal protein S26