HL_7TTU_010

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7TTU|1|1|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_010 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.1498

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7TTU|1|1|C|348
7TTU|1|1|U|349
7TTU|1|1|G|350
7TTU|1|1|G|351
7TTU|1|1|A|352
7TTU|1|1|A|353
7TTU|1|1|A|354
7TTU|1|1|G|355

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L24