HL_7TTU_012

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

7TTU|1|1|A|372, 7TTU|1|1|A|373, 7TTU|1|1|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_012 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1601

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7TTU|1|1|G|370
7TTU|1|1|U|371
7TTU|1|1|A|372
7TTU|1|1|A|373
7TTU|1|1|U|374
7TTU|1|1|A|375
7TTU|1|1|A|376
7TTU|1|1|U|377
7TTU|1|1|C|378

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L24

Chain S

50S ribosomal protein L4