HL_7TTU_027

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAUAAGGU

Length

10 nucleotides

Bulged bases

7TTU|1|1|U|1002, 7TTU|1|1|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_027 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2877

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7TTU|1|1|G|998
7TTU|1|1|U|999
7TTU|1|1|G|1000
7TTU|1|1|A|1001
7TTU|1|1|U|1002
7TTU|1|1|A|1003
7TTU|1|1|A|1004
7TTU|1|1|G|1005
7TTU|1|1|G|1006
7TTU|1|1|U|1007

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16