HL_7TTW_002

3D structure

PDB id

7TTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAGUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTW_002 not in the Motif Atlas

Geometric match to HL_4V9F_002

Geometric discrepancy: 0.3089

The information below is about HL_4V9F_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

7TTW|1|1|U|87
7TTW|1|1|G|88
7TTW|1|1|U|89
7TTW|1|1|A|90
7TTW|1|1|A|91
7TTW|1|1|G|92
7TTW|1|1|U|93
7TTW|1|1|A|94
7TTW|1|1|A|95

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23

Chain G

50S ribosomal protein L24

Chain K

50S ribosomal protein L29