7TTW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7TTW_001 | 1/1/67:74 | No text annotation | geometric HL_4P5J_004 NA | |
| HL_7TTW_002 | 1/1/87:95 | Pseudoknot geometry | geometric HL_4V9F_002 HL_52651.1 | |
| HL_7TTW_003 | 1/1/122:127 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_7TTW_004 | 1/1/136:143 | GNRA wlth tandem sheared | geometric HL_5AOX_001 HL_98423.1 | |
| HL_7TTW_005 | 1/1/158:170 | No text annotation | ||
| HL_7TTW_006 | 1/1/197:204 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_7TTW_007 | 1/1/228:233 | No text annotation | geometric HL_4WF9_007 HL_51020.1 | |
| HL_7TTW_008 | 1/1/249:255 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_7TTW_009 | 1/1/348:355 | T-loop with 1 bulged base | geometric HL_7A0S_010 HL_13999.1 | |
| HL_7TTW_010 | 1/1/362:366 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7TTW_011 | 1/1/370:378 | T-loop with unstacked turn | geometric HL_5J7L_144 NA | |
| HL_7TTW_071 | 1/1/428:438 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_7TTW_013 | 1/1/456:463 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.4 | |
| HL_7TTW_014 | 1/1/508:513 | GNRA | geometric HL_4WF9_015 HL_34789.1 | |
| HL_7TTW_015 | 1/1/533:538 | GNRA | geometric HL_5XTM_001 NA | |
| HL_7TTW_016 | 1/1/587:594 | No text annotation | geometric HL_4WF9_017 HL_50318.1 | |
| HL_7TTW_017 | 1/1/609:618 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.1 | |
| HL_7TTW_018 | 1/1/655:661 | GNRA | geometric HL_5J7L_148 NA | |
| HL_7TTW_019 | 1/1/674:679 | GNRA | geometric HL_6JQ5_002 NA | |
| HL_7TTW_020 | 1/1/686:692 | No text annotation | geometric HL_7RQB_021 NA | |
| HL_7TTW_021 | 1/1/757:764 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
| HL_7TTW_022 | 1/1/789:798 | No text annotation | geometric HL_4WF9_023 HL_50204.1 | |
| HL_7TTW_023 | 1/1/824:830 | No text annotation | geometric HL_4WF9_024 HL_92935.1 | |
| HL_7TTW_024 | 1/1/871:876 | No text annotation | geometric HL_5J7L_157 NA | |
| HL_7TTW_026 | 1/1/999:1006 | GNRA | geometric HL_4WF9_027 HL_34789.1 | |
| HL_7TTW_027 | 1/1/1022:1029 | No text annotation | geometric HL_4WF9_028 HL_47171.1 | |
| HL_7TTW_030 | 1/1/1260:1265 | GNRA | geometric HL_4WF9_031 HL_34789.1 | |
| HL_7TTW_031 | 1/1/1318:1326 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_032 HL_33597.1 | |
| HL_7TTW_032 | 1/1/1361:1367 | Pseudoknot geometry with 3' bulge | geometric HL_4WF9_033 HL_49081.1 | |
| HL_7TTW_033 | 1/1/1400:1405 | GNRA | geometric HL_5J7L_167 NA | |
| HL_7TTW_034 | 1/1/1426:1435 | No text annotation | geometric HL_4WF9_035 HL_77449.1 | |
| HL_7TTW_036 | 1/1/1612:1615 | Mini UNCG | geometric HL_5J7L_172 NA | |
| HL_7TTW_037 | 1/1/1656:1663 | No text annotation | geometric HL_4WF9_038 HL_28592.1 | |
| HL_7TTW_038 | 1/1/1673:1681 | GNRA with extra cWW | geometric HL_4WF9_039 HL_45359.1 | |
| HL_7TTW_039 | 1/1/1735:1740 | UNCG | geometric HL_4LFB_009 HL_61337.1 | |
| HL_7TTW_040 | 1/1/1762:1767 | GNRA | geometric HL_4WF9_016 HL_34789.1 | |
| HL_7TTW_041 | 1/1/1779:1783 | No text annotation | geometric HL_7RQB_044 NA | |
| HL_7TTW_042 | 1/1/1804:1814 | No text annotation | geometric HL_4WF9_043 HL_87681.1 | |
| HL_7TTW_043 | 1/1/1833:1838 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_7TTW_045 | 1/1/1937:1947 | No text annotation | ||
| HL_7TTW_046 | 1/1/1976:1984 | No text annotation | geometric HL_5J7L_182 NA | |
| HL_7TTW_047 | 1/1/2054:2063 | No text annotation | geometric HL_7RQB_050 NA | |
| HL_7TTW_049 | 1/1/2236:2242 | No text annotation | geometric HL_5J7L_185 NA | |
| HL_7TTW_050 | 1/1/2275:2283 | No text annotation | geometric HL_4WF9_049 HL_11974.1 | |
| HL_7TTW_051 | 1/1/2291:2303 | No text annotation | geometric HL_4WF9_050 HL_02042.1 | |
| HL_7TTW_070 | 1/1/2331:2339 | No text annotation | ||
| HL_7TTW_053 | 1/1/2351:2358 | Pseudoknot geometry | geometric HL_7RQB_056 NA | |
| HL_7TTW_054 | 1/1/2382:2389 | GNRA with extra cWW | geometric HL_4WF9_053 HL_45359.1 | |
| HL_7TTW_055 | 1/1/2401:2406 | GNRA | geometric HL_5J7L_152 NA | |
| HL_7TTW_056 | 1/1/2431:2440 | No text annotation | geometric HL_4WF9_055 HL_51853.1 | |
| HL_7TTW_057 | 1/1/2498:2506 | No text annotation | geometric HL_4V9F_062 HL_52011.1 | |
| HL_7TTW_058 | 1/1/2555:2562 | GNRA variation | geometric HL_4WF9_057 HL_46665.1 | |
| HL_7TTW_059 | 1/1/2578:2584 | No text annotation | geometric HL_4WF9_058 HL_48677.1 | |
| HL_7TTW_060 | 1/1/2621:2626 | GNRA | geometric HL_4LFB_024 HL_34789.1 | |
| HL_7TTW_061 | 1/1/2685:2690 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_7TTW_062 | 1/1/2728:2733 | Ribsomal LSU H95 | geometric HL_7A0S_064 HL_12125.1 | |
| HL_7TTW_063 | 1/1/2772:2786 | No text annotation | geometric HL_4WF9_062 HL_53269.1 | |
| HL_7TTW_064 | 1/1/2819:2824 | No text annotation | ||
| HL_7TTW_065 | 1/1/2839:2847 | No text annotation | geometric HL_4WF9_064 HL_37889.1 | |
| HL_7TTW_066 | 1/1/2876:2881 | GNRA | geometric HL_4LFB_024 HL_34789.1 | |
| HL_7TTW_067 | 1/2/36:42 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_7TTW_068 | 1/2/77:92 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7TTW_069 | No text annotation | ||
| HL_7TTW_012 | No text annotation | ||
| HL_7TTW_025 | No text annotation | ||
| HL_7TTW_028 | No text annotation | ||
| HL_7TTW_029 | No text annotation | ||
| HL_7TTW_035 | No text annotation | ||
| HL_7TTW_044 | No text annotation | ||
| HL_7TTW_048 | No text annotation | ||
| HL_7TTW_052 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7TTW_001 | 1/1/24:30, 1/1/555:561 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
| IL_7TTW_002 | 1/1/36:37, 1/1/488:490 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_7TTW_003 | 1/1/42:44, 1/1/480:483 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_82096.1 | |
| IL_7TTW_101 | 1/1/56:76, 1/1/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7TTW_004 | 1/1/81:85, 1/1/97:104 | Kink-turn | geometric IL_4WF9_004 IL_54465.1 | |
| IL_7TTW_005 | 1/1/152:153, 1/1/175:177 | Single bulged A | geometric IL_4R4V_004 IL_14190.1 | |
| IL_7TTW_006 | 1/1/186:187, 1/1/215:217 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_7TTW_007 | 1/1/190:197, 1/1/204:212 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7TTW_008 | 1/1/241:248, 1/1/256:262 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4WF9_009 IL_62167.1 | |
| IL_7TTW_009 | 1/1/336:338, 1/1/386:390 | No text annotation | geometric IL_4WF9_014 IL_76658.1 | |
| IL_7TTW_010 | 1/1/527:530, 1/1/541:554 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_7TTW_011 | 1/1/581:584, 1/1/597:600 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_7TTW_012 | 1/1/607:609, 1/1/618:620 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.1 | |
| IL_7TTW_013 | 1/1/638:640, 1/1/705:707 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_71625.1 | |
| IL_7TTW_014 | 1/1/649:653, 1/1/663:667 | AAA cross-strand stack | geometric IL_4WF9_019 IL_66798.3 | |
| IL_7TTW_015 | 1/1/717:719, 1/1/851:853 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7TTW_016 | 1/1/719:723, 1/1/844:851 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_73855.1 | |
| IL_7TTW_017 | 1/1/742:743, 1/1/808:810 | Single bulged A | geometric IL_4WF9_022 IL_14190.1 | |
| IL_7TTW_018 | 1/1/747:748, 1/1/773:775 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_7TTW_019 | 1/1/748:752, 1/1/769:773 | Triple sheared | geometric IL_4WF9_024 IL_15190.1 | |
| IL_7TTW_020 | 1/1/783:785, 1/1/802:803 | Major groove platform | geometric IL_5J7L_264 NA | |
| IL_7TTW_021 | 1/1/820:822, 1/1/832:836 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_7TTW_022 | 1/1/882:883, 1/1/984:986 | Single stack bend | geometric IL_7RQB_024 NA | |
| IL_7TTW_023 | 1/1/889:893, 1/1/975:978 | No text annotation | geometric IL_4WF9_029 IL_01742.1 | |
| IL_7TTW_024 | 1/1/894:896, 1/1/972:974 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_7TTW_025 | 1/1/897:898, 1/1/969:971 | No text annotation | ||
| IL_7TTW_026 | 1/1/901:907, 1/1/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.1 | |
| IL_7TTW_027 | 1/1/907:908, 1/1/958:960 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_7TTW_028 | 1/1/909:913, 1/1/954:957 | C-loop | geometric IL_4WF9_033 IL_16301.1 | |
| IL_7TTW_030 | 1/1/1038:1040, 1/1/1203:1204 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_7TTW_031 | 1/1/1042:1046, 1/1/1197:1201 | UAA/GAN | geometric IL_7A0S_033 IL_08938.1 | |
| IL_7TTW_032 | 1/1/1048:1055, 1/1/1194:1195 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_11411.1 | |
| IL_7TTW_033 | 1/1/1055:1057, 1/1/1193:1194 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_7TTW_034 | 1/1/1062:1068, 1/1/1184:1188 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_7TTW_103 | 1/1/1062:1074, 1/1/1168:1188 | No text annotation | ||
| IL_7TTW_035 | 1/1/1068:1074, 1/1/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_7TTW_036 | 1/1/1075:1078, 1/1/1165:1167 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_7TTW_037 | 1/1/1081:1083, 1/1/1160:1162 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_7TTW_038 | 1/1/1235:1237, 1/1/1285:1288 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.4 | |
| IL_7TTW_039 | 1/1/1243:1245, 1/1/1277:1279 | Isolated cWH basepair | geometric IL_4WF9_045 IL_10892.1 | |
| IL_7TTW_040 | 1/1/1246:1253, 1/1/1272:1276 | Kink-turn | geometric IL_4V9F_048 IL_90775.1 | |
| IL_7TTW_041 | 1/1/1257:1259, 1/1/1266:1268 | Intercalated cWW | geometric IL_4WF9_047 IL_61702.1 | |
| IL_7TTW_042 | 1/1/1300:1307, 1/1/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4WF9_048 IL_62167.1 | |
| IL_7TTW_043 | 1/1/1356:1360, 1/1/1368:1370 | Major groove minor groove platform with tHH | geometric IL_4WF9_050 IL_06671.1 | |
| IL_7TTW_044 | 1/1/1388:1392, 1/1/1413:1417 | UAA/GAN | geometric IL_4WF9_051 IL_89021.3 | |
| IL_7TTW_045 | 1/1/1394:1398, 1/1/1407:1411 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_7TTW_046 | 1/1/1447:1451, 1/1/1631:1636 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.1 | |
| IL_7TTW_048 | 1/1/1461:1465, 1/1/1624:1627 | Other IL | geometric IL_4WF9_054 IL_74317.1 | |
| IL_7TTW_049 | 1/1/1476:1480, 1/1/1604:1608 | No text annotation | homologous IL_4WF9_122 IL_67780.1 | |
| IL_7TTW_050 | 1/1/1481:1485, 1/1/1598:1603 | No text annotation | ||
| IL_7TTW_052 | 1/1/1511:1516, 1/1/1564:1570 | No text annotation | geometric IL_4WF9_058 NA | |
| IL_7TTW_104 | 1/1/1518:1522, 1/1/1558:1562 | Double sheared with near cWW | homologous IL_7A0S_056 IL_87767.1 | |
| IL_7TTW_054 | 1/1/1695:1700, 1/1/2031:2033 | No text annotation | geometric IL_4WF9_062 IL_12566.5 | |
| IL_7TTW_055 | 1/1/1707:1709, 1/1/2022:2024 | Isolated tWW turn | geometric IL_7A0S_060 IL_10432.1 | |
| IL_7TTW_056 | 1/1/1710:1713, 1/1/2020:2021 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.1 | |
| IL_7TTW_105 | 1/1/1710:1718, 1/1/2017:2021 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7TTW_057 | 1/1/1713:1718, 1/1/2017:2020 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_7TTW_058 | 1/1/1730:1735, 1/1/1740:1746 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_7TTW_059 | 1/1/1755:1761, 1/1/1768:1774 | No text annotation | homologous IL_4WF9_118 NA | |
| IL_7TTW_060 | 1/1/1797:1798, 1/1/2007:2009 | Single bulged A | geometric IL_5J7L_312 NA | |
| IL_7TTW_061 | 1/1/1825:1831, 1/1/1840:1848 | Kink-turn related | geometric IL_7RQB_070 NA | |
| IL_7TTW_062 | 1/1/1864:1867, 1/1/1929:1930 | Major groove intercalation | geometric IL_5TBW_084 NA | |
| IL_7TTW_063 | 1/1/1868:1869, 1/1/1925:1928 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_7TTW_064 | 1/1/1873:1876, 1/1/1920:1921 | Major groove minor groove platform; mini C-loop | geometric IL_7RQB_113 NA | |
| IL_7TTW_065 | 1/1/1878:1882, 1/1/1914:1918 | UAA/GAN with extra stack | geometric IL_4WF9_073 IL_89021.3 | |
| IL_7TTW_066 | 1/1/1883:1887, 1/1/1909:1913 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7TTW_067 | 1/1/1891:1894, 1/1/1901:1905 | UAA/GAN related | geometric IL_5J7L_317 NA | |
| IL_7TTW_068 | 1/1/1960:1961, 1/1/1991:1994 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.1 | |
| IL_7TTW_069 | 1/1/1961:1972, 1/1/1988:1991 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_7TTW_070 | 1/1/2077:2079, 1/1/2644:2645 | Major groove platform | geometric IL_7A0S_073 IL_48076.7 | |
| IL_7TTW_071 | 1/1/2081:2084, 1/1/2638:2642 | No text annotation | ||
| IL_7TTW_072 | 1/1/2094:2096, 1/1/2469:2470 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_7TTW_073 | 1/1/2097:2098, 1/1/2465:2468 | Minor groove platform | geometric IL_7RQB_081 NA | |
| IL_7TTW_074 | 1/1/2108:2110, 1/1/2263:2266 | Isolated tHS basepair with bulges | geometric IL_4WF9_082 IL_87316.1 | |
| IL_7TTW_075 | 1/1/2123:2125, 1/1/2218:2220 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.1 | |
| IL_7TTW_076 | 1/1/2229:2231, 1/1/2247:2248 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_7TTW_077 | 1/1/2324:2326, 1/1/2344:2348 | Isolated tHS basepair with bulges | geometric IL_4V9F_080 IL_14250.1 | |
| IL_7TTW_078 | 1/1/2377:2380, 1/1/2391:2394 | Double sheared | geometric IL_5J7L_333 NA | |
| IL_7TTW_079 | 1/1/2428:2430, 1/1/2441:2442 | Single bulged U | geometric IL_5J7L_334 NA | |
| IL_7TTW_080 | 1/1/2481:2482, 1/1/2523:2525 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_7TTW_081 | 1/1/2484:2486, 1/1/2520:2521 | Major groove platform | geometric IL_4WF9_091 IL_48076.7 | |
| IL_7TTW_082 | 1/1/2486:2488, 1/1/2516:2520 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_7TTW_083 | 1/1/2493:2497, 1/1/2507:2511 | Double sheared with non-canonical cWW | geometric IL_4WF9_093 IL_87767.1 | |
| IL_7TTW_084 | 1/1/2534:2536, 1/1/2606:2609 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
| IL_7TTW_085 | 1/1/2537:2540, 1/1/2598:2605 | No text annotation | ||
| IL_7TTW_086 | 1/1/2549:2550, 1/1/2567:2570 | Major groove platform with intercalation | geometric IL_5J7L_342 NA | |
| IL_7TTW_087 | 1/1/2618:2619, 1/1/2628:2630 | Single bulged A | homologous IL_4WF9_098 IL_14190.1 | |
| IL_7TTW_088 | 1/1/2663:2667, 1/1/2801:2809 | tSH-tHS-tHW | geometric IL_4WF9_099 IL_04638.4 | |
| IL_7TTW_089 | 1/1/2679:2685, 1/1/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_7TTW_090 | 1/1/2707:2711, 1/1/2752:2754 | C-loop | geometric IL_4WF9_101 IL_63596.12 | |
| IL_7TTW_091 | 1/1/2714:2718, 1/1/2745:2749 | UAA/GAN related, with intercalation | geometric IL_4WF9_102 IL_82016.1 | |
| IL_7TTW_092 | 1/1/2722:2723, 1/1/2738:2741 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_7TTW_093 | 1/1/2764:2769, 1/1/2789:2794 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_91079.1 | |
| IL_7TTW_094 | 1/1/2857:2859, 1/1/2898:2901 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_7TTW_095 | 1/1/2863:2865, 1/1/2891:2894 | No text annotation | geometric IL_4WF9_107 IL_05502.1 | |
| IL_7TTW_096 | 1/1/2867:2872, 1/1/2885:2889 | tHS double platform | geometric IL_4WF9_108 IL_48489.1 | |
| IL_7TTW_097 | 1/2/15:16, 1/2/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_7TTW_110 | 1/2/21:28, 1/2/52:58 | No text annotation | ||
| IL_7TTW_099 | 1/2/28:29, 1/2/49:52 | No text annotation | ||
| IL_7TTW_100 | 1/2/32:36, 1/2/42:46 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7TTW_102 | No text annotation | ||
| IL_7TTW_029 | Isolated cWS basepair | ||
| IL_7TTW_047 | No text annotation | ||
| IL_7TTW_051 | No text annotation | ||
| IL_7TTW_053 | No text annotation | ||
| IL_7TTW_106 | Tandem non-canonical cWW pairs | ||
| IL_7TTW_107 | No text annotation | ||
| IL_7TTW_108 | No text annotation | ||
| IL_7TTW_109 | No text annotation | ||
| IL_7TTW_098 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7TTW_001 | 1/1/30:31, 1/1/520:527, 1/1/554:555 | No text annotation | geometric J3_4V9F_011 J3_68715.1 | |
| J3_7TTW_012 | 1/1/30:31, 1/1/520:530, 1/1/541:555 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_7TTW_013 | 1/1/32:35, 1/1/491:507, 1/1/514:519 | No text annotation | homologous J3_4WF9_012 J3_07616.1 | |
| J3_7TTW_002 | 1/1/56:67, 1/1/74:76, 1/1/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_7TTW_003 | 1/1/272:276, 1/1/295:302, 1/1/415:416 | No text annotation | geometric J3_4WF9_022 J3_97971.2 | |
| J3_7TTW_015 | 1/1/340:344, 1/1/359:368, 1/1/380:384 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_7TTW_004 | 1/1/728:734, 1/1/818:820, 1/1/836:839 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_7TTW_005 | 1/1/743:745, 1/1/777:781, 1/1/805:808 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7TTW_006 | 1/1/1335:1340, 1/1/1669:1671, 1/1/1683:1686 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7TTW_007 | 1/1/1342:1346, 1/1/1649:1655, 1/1/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_7TTW_016 | 1/1/1381:1387, 1/1/1418:1422, 1/1/1439:1440 | No text annotation | homologous J3_4WF9_016 J3_94309.1 | |
| J3_7TTW_017 | 1/1/1468:1473, 1/1/1611:1612, 1/1/1615:1621 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_7TTW_008 | 1/1/2118:2120, 1/1/2223:2228, 1/1/2249:2255 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_7TTW_018 | 1/1/2309:2311, 1/1/2411:2422, 1/1/2448:2454 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7TTW_009 | 1/1/2322:2324, 1/1/2348:2350, 1/1/2359:2364 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7TTW_010 | 1/1/2544:2547, 1/1/2572:2574, 1/1/2588:2594 | No text annotation | homologous J3_8VTW_008 NA | |
| J3_7TTW_011 | 1/1/2834:2835, 1/1/2851:2856, 1/1/2902:2906 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J4_7TTW_001 | 1/1/271:272, 1/1/416:421, 1/1/445:452, 1/1/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_7TTW_002 | 1/1/340:344, 1/1/359:362, 1/1/366:368, 1/1/380:384 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_7TTW_003 | 1/1/644:647, 1/1/669:673, 1/1/680:684, 1/1/694:701 | No text annotation | homologous J4_4WF9_003 J4_69347.1 | |
| J4_7TTW_004 | 1/1/1308:1313, 1/1/1331:1332, 1/1/1689:1692, 1/1/2036:2037 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_7TTW_005 | 1/1/1347:1351, 1/1/1375:1380, 1/1/1441:1442, 1/1/1641:1648 | No text annotation | ||
| J4_7TTW_006 | 1/1/1799:1803, 1/1/1815:1819, 1/1/1854:1857, 1/1/2002:2006 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_7TTW_007 | 1/1/1860:1863, 1/1/1931:1933, 1/1/1951:1960, 1/1/1994:1999 | No text annotation | ||
| J4_7TTW_008 | 1/1/2312:2316, 1/1/2370:2374, 1/1/2397:2399, 1/1/2408:2410 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_7TTW_009 | 1/1/2670:2673, 1/1/2701:2703, 1/1/2758:2762, 1/1/2796:2798 | No text annotation | homologous J4_4WF9_009 J4_77044.5 | |
| J5_7TTW_001 | 1/1/47:54, 1/1/115:120, 1/1/129:130, 1/1/149:151, 1/1/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.1 | |
| J5_7TTW_008 | 1/1/271:276, 1/1/295:302, 1/1/415:421, 1/1/445:452, 1/1/467:470 | No text annotation | ||
| J5_7TTW_002 | 1/1/271:276, 1/1/295:303, 1/1/414:421, 1/1/445:452, 1/1/467:470 | No text annotation | ||
| J5_7TTW_003 | 1/1/576:578, 1/1/603:607, 1/1/620:622, 1/1/1299:1300, 1/1/2044:2045 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_7TTW_004 | 1/1/627:632, 1/1/713:716, 1/1/854:857, 1/1/1234:1235, 1/1/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_7TTW_005 | 1/1/1718:1726, 1/1/1750:1751, 1/1/1778:1779, 1/1/1783:1791, 1/1/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_7TTW_006 | 1/1/2084:2091, 1/1/2473:2481, 1/1/2525:2534, 1/1/2609:2615, 1/1/2633:2638 | No text annotation | ||
| J5_7TTW_009 | 1/1/2101:2104, 1/1/2270:2273, 1/1/2285:2286, 1/1/2308:2309, 1/1/2454:2462 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_7TTW_001 | 1/1/45:46, 1/1/181:186, 1/1/217:227, 1/1/234:238, 1/1/265:269, 1/1/472:479 | No text annotation | ||
| J6_7TTW_002 | 1/1/2100:2104, 1/1/2270:2273, 1/1/2285:2286, 1/1/2308:2311, 1/1/2411:2422, 1/1/2448:2463 | No text annotation | ||
| J6_7TTW_003 | 1/1/2101:2104, 1/1/2270:2273, 1/1/2285:2286, 1/1/2308:2311, 1/1/2411:2422, 1/1/2448:2462 | No text annotation | ||
| J7_7TTW_002 | 1/1/862:867, 1/1/880:881, 1/1/987:990, 1/1/1015:1020, 1/1/1031:1035, 1/1/1207:1208, 1/1/1224:1229 | No text annotation | ||
| J8_7TTW_001 | 1/1/8:15, 1/1/570:576, 1/1/2045:2050, 1/1/2067:2070, 1/1/2652:2657, 1/1/2815:2817, 1/1/2826:2831, 1/1/2909:2914 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7TTW_014 | No text annotation | ||
| J5_7TTW_007 | No text annotation | ||
| J7_7TTW_001 | No text annotation |
Coloring options: