HL_7TUT_008

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

7TUT|1|K|G|294, 7TUT|1|K|A|295, 7TUT|1|K|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1306

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TUT|1|K|C|289
7TUT|1|K|U|290
7TUT|1|K|U|291
7TUT|1|K|G|292
7TUT|1|K|G|293
7TUT|1|K|G|294
7TUT|1|K|A|295
7TUT|1|K|A|296
7TUT|1|K|U|297
7TUT|1|K|G|298

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain o

eL42