HL_7TUT_039

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_039 not in the Motif Atlas

Geometric match to HL_4NLF_001

Geometric discrepancy: 0.2057

The information below is about HL_4NLF_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7TUT|1|K|C|2561
7TUT|1|K|G|2562
7TUT|1|K|C|2563
7TUT|1|K|G|2564
7TUT|1|K|A|2565
7TUT|1|K|G|2566

Current chains

Chain K

28S ribosomal RNA

Nearby chains