HL_7TUT_061

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_061 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.2211

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7TUT|1|K|U|4301
7TUT|1|K|U|4302
7TUT|1|K|C|4303
7TUT|1|K|A|4304
7TUT|1|K|G|4305
7TUT|1|K|U|4306
7TUT|1|K|A|4307
7TUT|1|K|C|4308
7TUT|1|K|G|4309

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain Q

eL18

Chain T

eL21

Chain a

60S ribosomal protein L27a

Chain o

eL42