HL_7TUT_088

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_088 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.2892

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

7TUT|1|K|U|2006
7TUT|1|K|G|2007
7TUT|1|K|U|2008
7TUT|1|K|A|2009
7TUT|1|K|A|2010
7TUT|1|K|C|2011
7TUT|1|K|A|2012
7TUT|1|K|A|2013

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1