HL_7U0H_047

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAGAAAGUG

Length

9 nucleotides

Bulged bases

7U0H|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U0H_047 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3504

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7U0H|1|1|C|2163
7U0H|1|1|A|2164
7U0H|1|1|G|2165
7U0H|1|1|A|2166
7U0H|1|1|A|2167
7U0H|1|1|A|2168
7U0H|1|1|G|2169
7U0H|1|1|U|2170
7U0H|1|1|G|2171

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase