HL_7U0H_049

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

7U0H|1|1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U0H_049 not in the Motif Atlas

Homologous match to HL_5TBW_060

Geometric discrepancy: 0.1707

The information below is about HL_5TBW_060

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7U0H|1|1|C|2776
7U0H|1|1|G|2777
7U0H|1|1|G|2778
7U0H|1|1|A|2779
7U0H|1|1|A|2780
7U0H|1|1|U|2781
7U0H|1|1|U|2782
7U0H|1|1|U|2783
7U0H|1|1|G|2784

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain i

60S ribosomal protein L36-A