3D structure

PDB id
7U2I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAGCC(G7M)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7U2I_226 not in the Motif Atlas
Homologous match to HL_5J7L_205
Geometric discrepancy: 0.0753
The information below is about HL_5J7L_205
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7U2I|1|1a|C|522
7U2I|1|1a|A|523
7U2I|1|1a|G|524
7U2I|1|1a|C|525
7U2I|1|1a|C|526
7U2I|1|1a|G7M|527

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1l
30S ribosomal protein S12
Chain 1v
MG-mRNA

Coloring options:


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