HL_7U2J_109

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAGGUAG

Length

8 nucleotides

Bulged bases

7U2J|1|1y|G|17, 7U2J|1|1y|G|18, 7U2J|1|1y|U|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U2J_109 not in the Motif Atlas

Homologous match to HL_5J8B_105

Geometric discrepancy: 0.3267

The information below is about HL_5J8B_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7U2J|1|1y|C|13
7U2J|1|1y|A|14
7U2J|1|1y|A|15
7U2J|1|1y|G|17
7U2J|1|1y|G|18
7U2J|1|1y|U|19
7U2J|1|1y|A|21
7U2J|1|1y|G|22

Current chains

Chain 1y

E-site Deacylated tRNAgly

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA