HL_7U2J_164

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7U2J|1|2A|A|2268, 7U2J|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U2J_164 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.0662

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7U2J|1|2A|C|2264
7U2J|1|2A|U|2265
7U2J|1|2A|A|2266
7U2J|1|2A|A|2267
7U2J|1|2A|A|2268
7U2J|1|2A|A|2269
7U2J|1|2A|G|2270
7U2J|1|2A|G|2271
7U2J|1|2A|U|2272
7U2J|1|2A|A|2273
7U2J|1|2A|A|2274
7U2J|1|2A|C|2275
7U2J|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16