HL_7UCJ_002

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCAU(T6A)AC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: T6A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_002 not in the Motif Atlas

Geometric match to HL_4V9Q_214

Geometric discrepancy: 0.1176

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7UCJ|1|2|G|31
7UCJ|1|2|C|32
7UCJ|1|2|C|33
7UCJ|1|2|C|34
7UCJ|1|2|A|35
7UCJ|1|2|U|36
7UCJ|1|2|T6A|37
7UCJ|1|2|A|38
7UCJ|1|2|C|39

Current chains

Chain 2

P-site tRNA

Nearby chains

Chain 1

mRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain QQ

40S ribosomal protein S16