HL_7UCJ_013

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGUAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_013 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3566

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7UCJ|1|5|C|367
7UCJ|1|5|C|368
7UCJ|1|5|G|369
7UCJ|1|5|U|370
7UCJ|1|5|A|371
7UCJ|1|5|A|372
7UCJ|1|5|OMG|373
7UCJ|1|5|G|374

Current chains

Chain 5

28s rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain j

60S ribosomal protein L37

Chain l

60S ribosomal protein L39