HL_7UCJ_014

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_014 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3387

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7UCJ|1|5|U|392
7UCJ|1|5|U|393
7UCJ|1|5|G|394
7UCJ|1|5|A|395
7UCJ|1|5|A|396
7UCJ|1|5|G|397
7UCJ|1|5|A2M|398
7UCJ|1|5|G|399

Current chains

Chain 5

28s rRNA

Nearby chains

Chain P

60S ribosomal protein L17