HL_7UCJ_027

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7UCJ|1|5|C|1676, 7UCJ|1|5|C|1678, 7UCJ|1|5|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_027 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0978

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7UCJ|1|5|C|1675
7UCJ|1|5|C|1676
7UCJ|1|5|PSU|1677
7UCJ|1|5|C|1678
7UCJ|1|5|A|1679
7UCJ|1|5|G|1680

Current chains

Chain 5

28s rRNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a