HL_7UCJ_043

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_043 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.2999

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7UCJ|1|5|G|2664
7UCJ|1|5|U|2665
7UCJ|1|5|U|2666
7UCJ|1|5|C|2667
7UCJ|1|5|G|2668
7UCJ|1|5|C|2669
7UCJ|1|5|C|2670

Current chains

Chain 5

28s rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain p

60S ribosomal protein L37a