HL_7UCJ_069

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_069 not in the Motif Atlas

Geometric match to HL_1MZP_001

Geometric discrepancy: 0.0802

The information below is about HL_1MZP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7UCJ|1|5|C|4603
7UCJ|1|5|G|4604
7UCJ|1|5|A|4605
7UCJ|1|5|G|4606
7UCJ|1|5|A|4607
7UCJ|1|5|G|4608

Current chains

Chain 5

28s rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

60S ribosomal protein L40