HL_7UCJ_089

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_089 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.2274

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7UCJ|1|9|U|416
7UCJ|1|9|C|417
7UCJ|1|9|A|418
7UCJ|1|9|G|419
7UCJ|1|9|G|420
7UCJ|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain JJ

40S ribosomal protein S9

Chain LL

40S ribosomal protein S11

Chain WW

40S ribosomal protein S15a