HL_7UCJ_100
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UCJ_100 not in the Motif Atlas
- Geometric match to HL_5J7L_015
- Geometric discrepancy: 0.1113
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7UCJ|1|9|A|957
7UCJ|1|9|G|958
7UCJ|1|9|G|959
7UCJ|1|9|U|960
7UCJ|1|9|G|961
7UCJ|1|9|A|962
7UCJ|1|9|A|963
7UCJ|1|9|A|964
7UCJ|1|9|U|965
7UCJ|1|9|U|966
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- mRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain OO
- 40S ribosomal protein S14
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