HL_7UCJ_104

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_104 not in the Motif Atlas

Geometric match to HL_4V88_210

Geometric discrepancy: 0.0697

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCJ|1|9|G|1141
7UCJ|1|9|G|1142
7UCJ|1|9|A|1143
7UCJ|1|9|A|1144
7UCJ|1|9|A|1145
7UCJ|1|9|C|1146

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

eS26

Chain CC

40S ribosomal protein S2

Chain WW

40S ribosomal protein S15a