HL_7UCJ_106

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

7UCJ|1|9|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_106 not in the Motif Atlas

Homologous match to HL_8P9A_215

Geometric discrepancy: 0.1224

The information below is about HL_8P9A_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7UCJ|1|9|G|1245
7UCJ|1|9|A|1246
7UCJ|1|9|C|1247
7UCJ|1|9|B8N|1248
7UCJ|1|9|C|1249
7UCJ|1|9|A|1250
7UCJ|1|9|A|1251
7UCJ|1|9|C|1252
7UCJ|1|9|A|1253
7UCJ|1|9|C|1254

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain Dd

40S ribosomal protein S29

Chain QQ

40S ribosomal protein S16

Chain UU

40S ribosomal protein S20