HL_7UCJ_108

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCJ_108 not in the Motif Atlas

Geometric match to HL_5J7L_027

Geometric discrepancy: 0.0847

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7UCJ|1|9|A|1353
7UCJ|1|9|G|1354
7UCJ|1|9|C|1355
7UCJ|1|9|G|1356
7UCJ|1|9|A|1357
7UCJ|1|9|U|1358

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain CC

40S ribosomal protein S2