HL_7UCK_001

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGCGCAGGAGCGU

Length

13 nucleotides

Bulged bases

7UCK|1|2|G|18, 7UCK|1|2|G|19, 7UCK|1|2|A|21

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_001 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.5434

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7UCK|1|2|G|10
7UCK|1|2|G|11
7UCK|1|2|C|12
7UCK|1|2|G|13
7UCK|1|2|C|14
7UCK|1|2|A|15
7UCK|1|2|G|18
7UCK|1|2|G|19
7UCK|1|2|A|21
7UCK|1|2|G|22
7UCK|1|2|C|23
7UCK|1|2|G|24
7UCK|1|2|U|25

Current chains

Chain 2

P-site tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

60S ribosomal protein L11

Chain o

60S ribosomal protein L36a