HL_7UCK_029

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7UCK|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_029 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.4116

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7UCK|1|5|C|1816
7UCK|1|5|U|1817
7UCK|1|5|G|1818
7UCK|1|5|G|1819
7UCK|1|5|U|1820
7UCK|1|5|G|1821
7UCK|1|5|U|1822
7UCK|1|5|G|1823

Current chains

Chain 5

28s rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29