HL_7UCK_082

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

7UCK|1|8|U|124, 7UCK|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_082 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.3915

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7UCK|1|8|G|121
7UCK|1|8|G|122
7UCK|1|8|U|123
7UCK|1|8|U|124
7UCK|1|8|C|125
7UCK|1|8|C|126
7UCK|1|8|U|127
7UCK|1|8|C|128
7UCK|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L23a