HL_7UCK_085

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

7UCK|1|9|A|158, 7UCK|1|9|U|160, 7UCK|1|9|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_085 not in the Motif Atlas

Geometric match to HL_4V88_188

Geometric discrepancy: 0.1397

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UCK|1|9|G|156
7UCK|1|9|U|157
7UCK|1|9|A|158
7UCK|1|9|A2M|159
7UCK|1|9|U|160
7UCK|1|9|U|161
7UCK|1|9|C|162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain YY

40S ribosomal protein S24