HL_7UCK_103

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_103 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3748

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7UCK|1|9|U|1114
7UCK|1|9|U|1115
7UCK|1|9|C|1116
7UCK|1|9|C|1117
7UCK|1|9|C|1118
7UCK|1|9|A|1119

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain Bb

40S ribosomal protein S27