HL_7UCK_111

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_111 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.3296

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7UCK|1|9|C|1460
7UCK|1|9|G|1461
7UCK|1|9|U|1462
7UCK|1|9|U|1463
7UCK|1|9|C|1464
7UCK|1|9|A|1465
7UCK|1|9|G|1466

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Gg

Receptor of activated protein C kinase 1

Chain RR

40S ribosomal protein S17