HL_7UCK_119

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7UCK|1|5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UCK_119 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0852

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7UCK|1|5|U|1317
7UCK|1|5|C|1318
7UCK|1|5|U|1319
7UCK|1|5|U|1320
7UCK|1|5|G|1321
7UCK|1|5|1MA|1322
7UCK|1|5|A|1323
7UCK|1|5|A|1324
7UCK|1|5|C|1325
7UCK|1|5|A2M|1326

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain a

60S ribosomal protein L27a

Chain e

60S ribosomal protein L32