HL_7UG7_063

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UG7_063 not in the Motif Atlas

Geometric match to HL_5J7L_165

Geometric discrepancy: 0.0881

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7UG7|1|23|G|1281
7UG7|1|23|U|1282
7UG7|1|23|G|1283
7UG7|1|23|A|1284
7UG7|1|23|A|1285
7UG7|1|23|A|1286
7UG7|1|23|A|1287
7UG7|1|23|G|1288
7UG7|1|23|C|1289

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LQ

50S ribosomal protein L17

Chain LV

50S ribosomal protein L22

Chain Lf

50S ribosomal protein L32