HL_7UNR_077

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAAGGC

Length

9 nucleotides

Bulged bases

7UNR|1|a|G|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNR_077 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1303

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7UNR|1|a|G|253
7UNR|1|a|G|254
7UNR|1|a|U|255
7UNR|1|a|A|256
7UNR|1|a|A|257
7UNR|1|a|A|258
7UNR|1|a|G|259
7UNR|1|a|G|260
7UNR|1|a|C|261

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20