HL_7UNR_100

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUCAGAAUGU

Length

11 nucleotides

Bulged bases

7UNR|1|a|U|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNR_100 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1103

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7UNR|1|a|A|1350
7UNR|1|a|A|1351
7UNR|1|a|U|1352
7UNR|1|a|C|1353
7UNR|1|a|A|1354
7UNR|1|a|G|1355
7UNR|1|a|A|1356
7UNR|1|a|A|1357
7UNR|1|a|U|1358
7UNR|1|a|G|1359
7UNR|1|a|U|1360

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14