HL_7UNU_061

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGCCG

Length

8 nucleotides

Bulged bases

7UNU|1|A|G|2516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNU_061 not in the Motif Atlas

Geometric match to HL_4WF9_057

Geometric discrepancy: 0.1103

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7UNU|1|A|U|2515
7UNU|1|A|G|2516
7UNU|1|A|A|2517
7UNU|1|A|A|2518
7UNU|1|A|G|2519
7UNU|1|A|C|2520
7UNU|1|A|C|2521
7UNU|1|A|G|2522

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain x

Translation initiation factor IF-2