HL_7UNV_040

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

7UNV|1|A|A|1604, 7UNV|1|A|A|1606

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNV_040 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0685

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7UNV|1|A|C|1602
7UNV|1|A|G|1603
7UNV|1|A|A|1604
7UNV|1|A|C|1605
7UNV|1|A|A|1606
7UNV|1|A|C|1607
7UNV|1|A|6MZ|1608
7UNV|1|A|G|1609

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain U

50S ribosomal protein L22