7UNV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7UNV_001 | 1/A/59:68 | Pseudoknot geometry | geometric HL_4GXY_003 HL_65794.5 | |
| HL_7UNV_002 | 1/A/87:96 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7UNV_003 | 1/A/123:128 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7UNV_004 | 1/A/137:142 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7UNV_005 | 1/A/158:168 | No text annotation | geometric HL_5J7L_138 HL_68257.1 | |
| HL_7UNV_006 | 1/A/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_7UNV_007 | 1/A/225:230 | No text annotation | geometric HL_5J7L_140 HL_62934.1 | |
| HL_7UNV_008 | 1/A/246:252 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_7UNV_009 | 1/A/299:306 | T-loop with 1 bulged base | geometric HL_7A0S_010 HL_01609.3 | |
| HL_7UNV_010 | 1/A/313:317 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7UNV_011 | 1/A/321:329 | T-loop with unstacked turn | geometric HL_5J7L_144 HL_27670.2 | |
| HL_7UNV_012 | 1/A/373:383 | No text annotation | geometric HL_5J7L_145 HL_91503.7 | |
| HL_7UNV_013 | 1/A/401:408 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.3 | |
| HL_7UNV_014 | 1/A/453:458 | GNRA | geometric HL_7RQB_015 NA | |
| HL_7UNV_015 | 1/A/478:484 | GNRA | geometric HL_5J7L_148 HL_37824.7 | |
| HL_7UNV_016 | 1/A/535:538 | Mini UNCG | geometric HL_5U30_001 HL_48778.2 | |
| HL_7UNV_017 | 1/A/556:565 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.8 | |
| HL_7UNV_018 | 1/A/601:607 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_7UNV_019 | 1/A/619:624 | GNRA | geometric HL_5J7L_152 HL_37824.7 | |
| HL_7UNV_020 | 1/A/631:637 | No text annotation | geometric HL_7RQB_021 NA | |
| HL_7UNV_021 | 1/A/702:709 | GNRA wlth tandem sheared | geometric HL_5D8H_002 HL_81538.2 | |
| HL_7UNV_022 | 1/A/734:743 | No text annotation | geometric HL_4WF9_023 HL_88205.2 | |
| HL_7UNV_023 | 1/A/769:775 | No text annotation | geometric HL_7RQB_024 NA | |
| HL_7UNV_024 | 1/A/816:821 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_7UNV_025 | 1/A/874:880 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7UNV_026 | 1/A/945:952 | GNRA | geometric HL_4WF9_027 HL_37824.7 | |
| HL_7UNV_027 | 1/A/968:975 | No text annotation | geometric HL_5J7L_160 HL_42998.2 | |
| HL_7UNV_028 | 1/A/1054:1064 | No text annotation | geometric HL_5D8H_001 HL_19210.3 | |
| HL_7UNV_029 | 1/A/1082:1089 | GNRA wlth tandem sheared | geometric HL_6PRV_002 HL_81538.2 | |
| HL_7UNV_031 | 1/A/1209:1214 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7UNV_032 | 1/A/1268:1276 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_031 NA | |
| HL_7UNV_033 | 1/A/1311:1317 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
| HL_7UNV_034 | 1/A/1350:1355 | GNRA | geometric HL_5J7L_167 HL_37824.7 | |
| HL_7UNV_035 | 1/A/1376:1385 | No text annotation | geometric HL_4V9F_037 HL_81545.2 | |
| HL_7UNV_036 | 1/A/1438:1446 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_7UNV_037 | 1/A/1479:1485 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_7UNV_039 | 1/A/1555:1558 | Mini UNCG | geometric HL_7A0S_039 HL_48778.2 | |
| HL_7UNV_040 | 1/A/1602:1609 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_7UNV_041 | 1/A/1620:1626 | GNRA | geometric HL_5J7L_174 HL_37824.7 | |
| HL_7UNV_042 | 1/A/1681:1686 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7UNV_043 | 1/A/1714:1720 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_7UNV_044 | 1/A/1739:1743 | No text annotation | geometric HL_5J7L_177 HL_80709.3 | |
| HL_7UNV_045 | 1/A/1764:1774 | No text annotation | geometric HL_4WF9_043 HL_01962.2 | |
| HL_7UNV_046 | 1/A/1793:1798 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_7UNV_047 | 1/A/1855:1860 | GNRA | geometric HL_5X2G_001 HL_37824.7 | |
| HL_7UNV_048 | 1/A/1897:1907 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7UNV_049 | 1/A/1936:1944 | No text annotation | geometric HL_5J7L_182 HL_20167.2 | |
| HL_7UNV_050 | 1/A/2014:2023 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_7UNV_051 | 1/A/2130:2135 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7UNV_052 | 1/A/2196:2202 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
| HL_7UNV_053 | 1/A/2235:2243 | No text annotation | geometric HL_7A0S_052 HL_85367.2 | |
| HL_7UNV_054 | 1/A/2251:2263 | No text annotation | geometric HL_5J7L_187 HL_91939.2 | |
| HL_7UNV_109 | 1/A/2291:2299 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
| HL_7UNV_056 | 1/A/2311:2318 | Pseudoknot geometry | geometric HL_5J7L_189 HL_93324.4 | |
| HL_7UNV_057 | 1/A/2342:2349 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_7UNV_058 | 1/A/2361:2366 | GNRA | geometric HL_5J7L_191 HL_37824.7 | |
| HL_7UNV_059 | 1/A/2391:2400 | No text annotation | geometric HL_5J7L_192 HL_53454.2 | |
| HL_7UNV_060 | 1/A/2458:2466 | No text annotation | geometric HL_4V9F_062 HL_32735.2 | |
| HL_7UNV_061 | 1/A/2515:2522 | No text annotation | geometric HL_5J7L_194 HL_31585.4 | |
| HL_7UNV_062 | 1/A/2538:2544 | No text annotation | geometric HL_4WF9_058 HL_30068.2 | |
| HL_7UNV_063 | 1/A/2581:2586 | GNRA | geometric HL_3IGI_003 HL_37824.7 | |
| HL_7UNV_064 | 1/A/2645:2650 | GNRA | geometric HL_5J7L_197 HL_37824.7 | |
| HL_7UNV_065 | 1/A/2688:2693 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
| HL_7UNV_066 | 1/A/2732:2746 | No text annotation | geometric HL_4V9F_068 HL_74055.2 | |
| HL_7UNV_067 | 1/A/2783:2786 | Mini UNCG | geometric HL_5FQ5_002 HL_48778.2 | |
| HL_7UNV_068 | 1/A/2806:2814 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_7UNV_069 | 1/A/2843:2848 | GNRA | geometric HL_5J7L_152 HL_37824.7 | |
| HL_7UNV_106 | 1/B/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_7UNV_070 | 1/B/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7UNV_071 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_7UNV_072 | 1/a/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_7UNV_073 | 1/a/80:83 | Mini UNCG | geometric HL_5F9R_002 HL_48778.2 | |
| HL_7UNV_074 | 1/a/152:157 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_7UNV_075 | 1/a/180:185 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_7UNV_076 | 1/a/201:206 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7UNV_077 | 1/a/253:261 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_7UNV_078 | 1/a/290:295 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_7UNV_079 | 1/a/314:327 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_7UNV_080 | 1/a/336:341 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_7UNV_081 | 1/a/373:378 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_7UNV_082 | 1/a/413:418 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_7UNV_083 | 1/a/456:464 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_7UNV_108 | 1/a/516:521 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_7UNV_085 | 1/a/611:617 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7UNV_086 | 1/a/683:692 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_7UNV_087 | 1/a/720:725 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_7UNV_088 | 1/a/780:790 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_7UNV_089 | 1/a/856:861 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_7UNV_090 | 1/a/891:896 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_7UNV_091 | 1/a/957:966 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7UNV_092 | 1/a/1006:1011 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7UNV_093 | 1/a/1022:1027 | UNCG | geometric HL_1NBS_006 HL_34617.5 | |
| HL_7UNV_094 | 1/a/1070:1075 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_7UNV_095 | 1/a/1083:1090 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7UNV_096 | 1/a/1128:1134 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_7UNV_097 | 1/a/1159:1165 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_7UNV_098 | 1/a/1259:1264 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_7UNV_099 | 1/a/1308:1317 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_7UNV_100 | 1/a/1350:1360 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7UNV_101 | 1/a/1443:1448 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_7UNV_102 | 1/a/1509:1514 | GNRA | homologous HL_6CZR_103 NA | |
| HL_7UNV_103 | 1/v/13:22 | tRNA D-loop | geometric HL_4TUE_033 HL_93616.2 | |
| HL_7UNV_104 | 1/v/31:39 | tRNA anticodon loop | geometric HL_4WT8_216 HL_06059.6 | |
| HL_7UNV_105 | 1/v/53:61 | No text annotation | geometric HL_4V9F_003 HL_75660.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7UNV_030 | No text annotation | ||
| HL_7UNV_038 | No text annotation | ||
| HL_7UNV_055 | No text annotation | ||
| HL_7UNV_107 | No text annotation | ||
| HL_7UNV_084 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7UNV_001 | 1/A/24:30, 1/A/501:507 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_7UNV_002 | 1/A/36:37, 1/A/433:435 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_7UNV_003 | 1/A/43:44, 1/A/425:427 | Minor groove platform | geometric IL_7A0S_003 IL_51454.3 | |
| IL_7UNV_004 | 1/A/81:85, 1/A/98:105 | Kink-turn | geometric IL_7RQB_004 NA | |
| IL_7UNV_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_7UNV_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
| IL_7UNV_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
| IL_7UNV_008 | 1/A/269:274, 1/A/354:361 | No text annotation | ||
| IL_7UNV_009 | 1/A/279:282, 1/A/346:349 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_77658.1 | |
| IL_7UNV_010 | 1/A/287:289, 1/A/337:341 | No text annotation | geometric IL_4WF9_014 IL_69440.3 | |
| IL_7UNV_011 | 1/A/297:299, 1/A/306:308 | Isolated non-canonical cWW pair | geometric IL_3BNR_007 IL_28037.2 | |
| IL_7UNV_012 | 1/A/472:475, 1/A/487:500 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_7UNV_013 | 1/A/527:530, 1/A/544:547 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_7UNV_014 | 1/A/534:535, 1/A/538:540 | Single bulged U | geometric IL_6MWN_006 IL_89505.4 | |
| IL_7UNV_015 | 1/A/554:556, 1/A/565:567 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_7UNV_016 | 1/A/596:600, 1/A/608:612 | AAA cross-strand stack | geometric IL_5J7L_258 IL_66798.2 | |
| IL_7UNV_017 | 1/A/662:664, 1/A/796:798 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7UNV_018 | 1/A/664:668, 1/A/789:796 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_7UNV_019 | 1/A/687:688, 1/A/753:755 | Single bulged A | geometric IL_5J7L_261 IL_31462.6 | |
| IL_7UNV_020 | 1/A/692:693, 1/A/718:720 | Single bulged G | geometric IL_7A0S_017 IL_00225.13 | |
| IL_7UNV_021 | 1/A/693:697, 1/A/714:718 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_7UNV_022 | 1/A/728:730, 1/A/747:748 | Major groove platform | geometric IL_5J7L_264 IL_48076.6 | |
| IL_7UNV_023 | 1/A/731:733, 1/A/744:746 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_87907.2 | |
| IL_7UNV_024 | 1/A/765:767, 1/A/777:781 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_7UNV_025 | 1/A/834:837, 1/A/919:924 | No text annotation | ||
| IL_7UNV_026 | 1/A/839:840, 1/A/915:917 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_7UNV_027 | 1/A/845:851, 1/A/904:910 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_7UNV_028 | 1/A/851:852, 1/A/902:904 | Minor groove platform | geometric IL_4V9F_034 IL_51454.3 | |
| IL_7UNV_029 | 1/A/853:857, 1/A/898:901 | C-loop with bulged stacked A's | geometric IL_4WF9_033 IL_26222.2 | |
| IL_7UNV_030 | 1/A/859:861, 1/A/894:896 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
| IL_7UNV_031 | 1/A/864:868, 1/A/887:891 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_7UNV_032 | 1/A/869:874, 1/A/880:886 | No text annotation | ||
| IL_7UNV_033 | 1/A/984:986, 1/A/1150:1151 | Single bulged C | geometric IL_5J7L_276 IL_61258.15 | |
| IL_7UNV_034 | 1/A/988:992, 1/A/1144:1148 | UAA/GAN | geometric IL_5J7L_277 IL_38507.2 | |
| IL_7UNV_035 | 1/A/994:1001, 1/A/1141:1142 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_7UNV_036 | 1/A/1001:1003, 1/A/1140:1141 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_7UNV_037 | 1/A/1008:1014, 1/A/1130:1135 | No text annotation | geometric IL_7RQB_039 NA | |
| IL_7UNV_038 | 1/A/1014:1020, 1/A/1114:1130 | No text annotation | geometric IL_4WF9_040 IL_50715.3 | |
| IL_7UNV_039 | 1/A/1021:1024, 1/A/1111:1113 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 IL_57744.1 | |
| IL_7UNV_040 | 1/A/1028:1031, 1/A/1104:1107 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_7UNV_041 | 1/A/1033:1041, 1/A/1098:1102 | Kink-turn | geometric IL_4V9F_042 IL_99692.2 | |
| IL_7UNV_042 | 1/A/1049:1052, 1/A/1066:1069 | No text annotation | geometric IL_5D8H_002 IL_92446.2 | |
| IL_7UNV_043 | 1/A/1077:1080, 1/A/1091:1092 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_7UNV_044 | 1/A/1183:1185, 1/A/1234:1237 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.3 | |
| IL_7UNV_045 | 1/A/1189:1193, 1/A/1227:1230 | No text annotation | geometric IL_5J7L_287 IL_91920.1 | |
| IL_7UNV_046 | 1/A/1195:1202, 1/A/1221:1225 | Kink-turn | geometric IL_5J7L_288 IL_70923.9 | |
| IL_7UNV_047 | 1/A/1249:1256, 1/A/1998:2004 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 IL_04346.10 | |
| IL_7UNV_048 | 1/A/1297:1300, 1/A/1593:1594 | Major groove platform; stack outside cWW | geometric IL_5J7L_290 IL_50694.7 | |
| IL_7UNV_049 | 1/A/1306:1310, 1/A/1318:1320 | C-loop | geometric IL_7RQB_051 NA | |
| IL_7UNV_050 | 1/A/1338:1342, 1/A/1363:1367 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
| IL_7UNV_051 | 1/A/1344:1348, 1/A/1357:1361 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
| IL_7UNV_052 | 1/A/1402:1403, 1/A/1572:1577 | 180 degree turn | homologous IL_8VTW_053 NA | |
| IL_7UNV_053 | 1/A/1404:1408, 1/A/1567:1571 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_7UNV_054 | 1/A/1419:1422, 1/A/1547:1551 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_7UNV_055 | 1/A/1424:1427, 1/A/1541:1545 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_7UNV_056 | 1/A/1437:1438, 1/A/1446:1448 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_7UNV_057 | 1/A/1455:1458, 1/A/1507:1511 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_7UNV_058 | 1/A/1460:1465, 1/A/1500:1505 | No text annotation | ||
| IL_7UNV_059 | 1/A/1468:1469, 1/A/1494:1497 | 180 degree turn | geometric IL_5J7L_301 IL_00881.1 | |
| IL_7UNV_060 | 1/A/1476:1478, 1/A/1486:1487 | Single bulged A | geometric IL_5J7L_302 IL_31462.6 | |
| IL_7UNV_061 | 1/A/1513:1516, 1/A/1532:1536 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
| IL_7UNV_062 | 1/A/1641:1646, 1/A/1991:1993 | No text annotation | geometric IL_5J7L_304 IL_12566.4 | |
| IL_7UNV_063 | 1/A/1653:1655, 1/A/1982:1984 | Isolated tWW turn | geometric IL_7A0S_060 IL_67095.2 | |
| IL_7UNV_064 | 1/A/1656:1659, 1/A/1980:1981 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_7UNV_179 | 1/A/1656:1664, 1/A/1977:1981 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_7UNV_065 | 1/A/1659:1664, 1/A/1977:1980 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_7UNV_066 | 1/A/1676:1681, 1/A/1686:1692 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_7UNV_067 | 1/A/1708:1712, 1/A/1722:1727 | Triple sheared related | geometric IL_5J7L_063 IL_80231.1 | |
| IL_7UNV_068 | 1/A/1757:1758, 1/A/1967:1969 | Single bulged A | geometric IL_5J7L_312 IL_31462.6 | |
| IL_7UNV_069 | 1/A/1785:1791, 1/A/1800:1808 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
| IL_7UNV_070 | 1/A/1824:1827, 1/A/1889:1890 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_7UNV_071 | 1/A/1828:1829, 1/A/1885:1888 | Major groove intercalation | geometric IL_4V9F_067 IL_82107.4 | |
| IL_7UNV_072 | 1/A/1833:1836, 1/A/1880:1881 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_316 IL_68140.4 | |
| IL_7UNV_180 | 1/A/1838:1847, 1/A/1869:1878 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_7UNV_073 | 1/A/1851:1854, 1/A/1861:1865 | UAA/GAN variation | geometric IL_5J7L_317 IL_77691.5 | |
| IL_7UNV_074 | 1/A/1920:1921, 1/A/1951:1954 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_7UNV_075 | 1/A/1921:1932, 1/A/1948:1951 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_7UNV_076 | 1/A/2037:2039, 1/A/2604:2605 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_7UNV_077 | 1/A/2041:2043, 1/A/2599:2602 | No text annotation | geometric IL_4WF9_079 IL_83389.2 | |
| IL_7UNV_181 | 1/A/2054:2056, 1/A/2429:2430 | Single bulged U | homologous IL_4WF9_080 IL_89505.4 | |
| IL_7UNV_080 | 1/A/2057:2058, 1/A/2425:2428 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7UNV_081 | 1/A/2068:2070, 1/A/2223:2226 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
| IL_7UNV_082 | 1/A/2072:2074, 1/A/2219:2221 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 IL_28037.2 | |
| IL_7UNV_083 | 1/A/2090:2093, 1/A/2170:2173 | Self complementary | geometric IL_3NDB_001 NA | |
| IL_7UNV_182 | 1/A/2094:2107, 1/A/2165:2169 | No text annotation | ||
| IL_7UNV_084 | 1/A/2103:2115, 1/A/2147:2152 | No text annotation | ||
| IL_7UNV_183 | 1/A/2110:2115, 1/A/2147:2162 | No text annotation | ||
| IL_7UNV_085 | 1/A/2115:2124, 1/A/2141:2147 | No text annotation | ||
| IL_7UNV_086 | 1/A/2189:2191, 1/A/2207:2208 | Single bulged U | geometric IL_4O26_001 IL_89505.4 | |
| IL_7UNV_087 | 1/A/2284:2286, 1/A/2304:2308 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
| IL_7UNV_088 | 1/A/2337:2340, 1/A/2351:2354 | Double sheared | geometric IL_7RQB_089 NA | |
| IL_7UNV_089 | 1/A/2388:2390, 1/A/2401:2402 | Single bulged U | geometric IL_6UFG_004 IL_89505.4 | |
| IL_7UNV_184 | 1/A/2440:2441, 1/A/2485:2487 | Single stack bend | homologous IL_5J7L_391 IL_26793.1 | |
| IL_7UNV_185 | 1/A/2441:2442, 1/A/2483:2485 | Major groove platform | homologous IL_5J7L_392 IL_48076.6 | |
| IL_7UNV_091 | 1/A/2444:2446, 1/A/2480:2481 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_7UNV_092 | 1/A/2446:2448, 1/A/2476:2480 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_7UNV_093 | 1/A/2453:2457, 1/A/2467:2471 | Triple sheared | geometric IL_5J7L_338 IL_17948.2 | |
| IL_7UNV_094 | 1/A/2494:2495, 1/A/2567:2569 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_7UNV_095 | 1/A/2497:2499, 1/A/2561:2565 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_7UNV_096 | 1/A/2499:2500, 1/A/2558:2561 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_7UNV_097 | 1/A/2509:2510, 1/A/2527:2530 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
| IL_7UNV_098 | 1/A/2578:2579, 1/A/2588:2590 | Single bulged A | geometric IL_5TBW_113 NA | |
| IL_7UNV_099 | 1/A/2623:2627, 1/A/2761:2769 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_7UNV_100 | 1/A/2639:2645, 1/A/2650:2655 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_7UNV_101 | 1/A/2667:2671, 1/A/2712:2714 | C-loop | geometric IL_7RQB_104 NA | |
| IL_7UNV_102 | 1/A/2674:2678, 1/A/2705:2709 | No text annotation | geometric IL_5J7L_348 IL_23774.1 | |
| IL_7UNV_103 | 1/A/2682:2683, 1/A/2698:2701 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_7UNV_104 | 1/A/2724:2729, 1/A/2749:2754 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_7UNV_105 | 1/A/2782:2783, 1/A/2786:2788 | Single bulged A | geometric IL_4AOB_001 IL_31462.6 | |
| IL_7UNV_106 | 1/A/2793:2798, 1/A/2876:2879 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_7UNV_107 | 1/A/2825:2826, 1/A/2865:2867 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_7UNV_108 | 1/A/2830:2833, 1/A/2857:2861 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.5 | |
| IL_7UNV_109 | 1/A/2834:2839, 1/A/2852:2856 | tHS double platform | geometric IL_5J7L_354 IL_70411.2 | |
| IL_7UNV_110 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
| IL_7UNV_111 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_7UNV_112 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7UNV_113 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7UNV_114 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7UNV_115 | 1/a/30:32, 1/a/546:547 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_7UNV_116 | 1/a/44:45, 1/a/390:392 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_7UNV_117 | 1/a/47:52, 1/a/353:355 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_7UNV_118 | 1/a/54:56, 1/a/350:351 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_7UNV_119 | 1/a/63:66, 1/a/97:98 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_7UNV_120 | 1/a/67:69, 1/a/94:96 | Isolated non-canonical cWW pair | geometric IL_6CZR_171 NA | |
| IL_7UNV_121 | 1/a/70:75, 1/a/88:93 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_7UNV_122 | 1/a/122:125, 1/a/225:227 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_7UNV_123 | 1/a/126:130, 1/a/221:224 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7UNV_124 | 1/a/138:140, 1/a/170:172 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_7UNV_125 | 1/a/141:147, 1/a/162:169 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_7UNV_192 | 1/a/197:200, 1/a/207:208 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_7UNV_127 | 1/a/236:241, 1/a/271:278 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_7UNV_128 | 1/a/243:246, 1/a/268:269 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7UNV_129 | 1/a/286:287, 1/a/298:302 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_7UNV_130 | 1/a/361:363, 1/a/386:387 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_7UNV_131 | 1/a/365:369, 1/a/383:384 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7UNV_132 | 1/a/369:370, 1/a/381:383 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_7UNV_133 | 1/a/403:410, 1/a/421:427 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_7UNV_134 | 1/a/434:436, 1/a/486:491 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_7UNV_135 | 1/a/440:444, 1/a/477:482 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_7UNV_136 | 1/a/444:447, 1/a/473:477 | No text annotation | ||
| IL_7UNV_137 | 1/a/498:505, 1/a/534:535 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_7UNV_138 | 1/a/509:515, 1/a/522:530 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7UNV_139 | 1/a/563:569, 1/a/874:875 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_7UNV_140 | 1/a/574:578, 1/a/751:755 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_7UNV_141 | 1/a/587:590, 1/a/638:640 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_7UNV_142 | 1/a/591:592, 1/a/634:637 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_7UNV_143 | 1/a/599:606, 1/a/622:627 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_7UNV_144 | 1/a/648:649, 1/a/745:748 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_7UNV_145 | 1/a/652:653, 1/a/740:742 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_7UNV_187 | 1/a/656:660, 1/a/734:737 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_7UNV_188 | 1/a/667:671, 1/a/707:711 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_7UNV_148 | 1/a/677:682, 1/a/693:701 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_7UNV_149 | 1/a/768:772, 1/a/798:799 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_7UNV_150 | 1/a/773:777, 1/a/793:797 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_7UNV_151 | 1/a/881:888, 1/a/899:904 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_7UNV_152 | 1/a/916:917, 1/a/1387:1389 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_7UNV_153 | 1/a/919:921, 1/a/1384:1385 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_7UNV_154 | 1/a/927:929, 1/a/1374:1378 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7UNV_155 | 1/a/947:948, 1/a/1220:1222 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_7UNV_156 | 1/a/987:991, 1/a/1038:1039 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_7UNV_157 | 1/a/992:993, 1/a/1035:1037 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_7UNV_158 | 1/a/1000:1004, 1/a/1013:1017 | No text annotation | ||
| IL_7UNV_159 | 1/a/1042:1044, 1/a/1202:1203 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_7UNV_189 | 1/a/1046:1050, 1/a/1198:1200 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7UNV_161 | 1/a/1051:1052, 1/a/1193:1197 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7UNV_162 | 1/a/1054:1055, 1/a/1189:1191 | Single bulged A | homologous IL_5J7L_049 IL_31462.6 | |
| IL_7UNV_163 | 1/a/1055:1057, 1/a/1187:1189 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_7UNV_164 | 1/a/1118:1122, 1/a/1138:1143 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_7UNV_165 | 1/a/1123:1126, 1/a/1136:1137 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7UNV_166 | 1/a/1152:1155, 1/a/1169:1175 | No text annotation | homologous IL_4LFB_050 IL_42032.1 | |
| IL_7UNV_190 | 1/a/1238:1240, 1/a/1286:1287 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7UNV_191 | 1/a/1240:1247, 1/a/1278:1286 | No text annotation | ||
| IL_7UNV_167 | 1/a/1249:1252, 1/a/1271:1276 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_7UNV_168 | 1/a/1253:1257, 1/a/1266:1270 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_7UNV_169 | 1/a/1297:1302, 1/a/1323:1328 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_7UNV_170 | 1/a/1393:1395, 1/a/1495:1498 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_7UNV_171 | 1/a/1395:1398, 1/a/1491:1495 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_7UNV_172 | 1/a/1399:1401, 1/a/1488:1490 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_7UNV_173 | 1/a/1401:1403, 1/a/1485:1488 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_7UNV_174 | 1/a/1406:1408, 1/a/1480:1482 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_7UNV_175 | 1/a/1410:1413, 1/a/1475:1478 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_7UNV_176 | 1/a/1424:1429, 1/a/1460:1464 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_7UNV_177 | 1/a/1434:1436, 1/a/1454:1455 | Single bulged A | homologous IL_5J7L_064 IL_31462.6 | |
| IL_7UNV_178 | 1/a/1439:1442, 1/a/1449:1451 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7UNV_078 | Not an internal loop | ||
| IL_7UNV_079 | Isolated non-canonical cWW pair | ||
| IL_7UNV_090 | No text annotation | ||
| IL_7UNV_186 | No text annotation | ||
| IL_7UNV_126 | No text annotation | ||
| IL_7UNV_146 | Partly complementary | ||
| IL_7UNV_147 | No text annotation | ||
| IL_7UNV_160 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7UNV_001 | 1/A/30:31, 1/A/465:472, 1/A/500:501 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_7UNV_026 | 1/A/30:31, 1/A/465:475, 1/A/487:501 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_7UNV_027 | 1/A/32:35, 1/A/436:452, 1/A/459:464 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_7UNV_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_7UNV_028 | 1/A/291:295, 1/A/310:319, 1/A/331:335 | No text annotation | homologous J3_4WF9_015 J3_46299.2 | |
| J3_7UNV_003 | 1/A/673:679, 1/A/763:765, 1/A/781:784 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_7UNV_004 | 1/A/688:690, 1/A/722:726, 1/A/750:753 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7UNV_005 | 1/A/1045:1047, 1/A/1071:1077, 1/A/1092:1094 | No text annotation | homologous J3_8VTW_003 NA | |
| J3_7UNV_006 | 1/A/1285:1290, 1/A/1615:1617, 1/A/1629:1632 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7UNV_007 | 1/A/1293:1296, 1/A/1595:1601, 1/A/1610:1612 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7UNV_039 | 1/A/1331:1336, 1/A/1369:1372, 1/A/1389:1390 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_7UNV_030 | 1/A/1411:1416, 1/A/1554:1555, 1/A/1558:1564 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_7UNV_008 | 1/A/2078:2080, 1/A/2183:2187, 1/A/2210:2215 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7UNV_031 | 1/A/2269:2271, 1/A/2371:2382, 1/A/2408:2414 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_7UNV_009 | 1/A/2282:2284, 1/A/2308:2310, 1/A/2319:2324 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7UNV_032 | 1/A/2282:2286, 1/A/2304:2310, 1/A/2319:2324 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_7UNV_010 | 1/A/2504:2507, 1/A/2532:2534, 1/A/2548:2554 | No text annotation | homologous J3_8VTW_008 NA | |
| J3_7UNV_011 | 1/A/2776:2778, 1/A/2792:2793, 1/A/2879:2881 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_7UNV_012 | 1/A/2801:2802, 1/A/2818:2823, 1/A/2869:2873 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_7UNV_013 | 1/B/10:16, 1/B/68:69, 1/B/107:110 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
| J3_7UNV_014 | 1/a/46:47, 1/a/355:361, 1/a/387:389 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7UNV_033 | 1/a/46:52, 1/a/353:361, 1/a/387:389 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_7UNV_015 | 1/a/580:582, 1/a/645:648, 1/a/748:749 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_7UNV_034 | 1/a/580:582, 1/a/645:649, 1/a/745:749 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_7UNV_016 | 1/a/666:667, 1/a/711:719, 1/a/726:728 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_7UNV_017 | 1/a/820:823, 1/a/851:855, 1/a/862:868 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_7UNV_035 | 1/a/930:933, 1/a/1338:1344, 1/a/1366:1373 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7UNV_018 | 1/a/937:940, 1/a/1229:1231, 1/a/1331:1334 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7UNV_019 | 1/a/949:956, 1/a/967:978, 1/a/1215:1219 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_7UNV_020 | 1/a/984:987, 1/a/1039:1041, 1/a/1204:1209 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_7UNV_036 | 1/a/984:991, 1/a/1038:1041, 1/a/1204:1209 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_7UNV_021 | 1/a/997:1000, 1/a/1017:1021, 1/a/1028:1031 | No text annotation | ||
| J3_7UNV_022 | 1/a/1057:1062, 1/a/1101:1107, 1/a/1181:1187 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_7UNV_037 | 1/a/1067:1068, 1/a/1077:1080, 1/a/1093:1096 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_7UNV_024 | 1/a/1110:1112, 1/a/1149:1152, 1/a/1175:1178 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_7UNV_038 | 1/a/1110:1112, 1/a/1149:1155, 1/a/1169:1178 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_7UNV_025 | 1/a/1231:1235, 1/a/1290:1297, 1/a/1328:1331 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_7UNV_001 | 1/A/268:269, 1/A/361:366, 1/A/390:397, 1/A/412:415 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_7UNV_002 | 1/A/291:295, 1/A/310:313, 1/A/317:319, 1/A/331:335 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
| J4_7UNV_003 | 1/A/591:594, 1/A/614:618, 1/A/625:628, 1/A/640:646 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_7UNV_004 | 1/A/1257:1263, 1/A/1281:1282, 1/A/1635:1638, 1/A/1996:1997 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_7UNV_005 | 1/A/1297:1301, 1/A/1325:1330, 1/A/1391:1392, 1/A/1587:1594 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_7UNV_006 | 1/A/1300:1301, 1/A/1325:1330, 1/A/1391:1392, 1/A/1587:1593 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_7UNV_007 | 1/A/1431:1432, 1/A/1453:1454, 1/A/1512:1513, 1/A/1536:1537 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_7UNV_008 | 1/A/1759:1763, 1/A/1775:1779, 1/A/1814:1817, 1/A/1962:1966 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7UNV_009 | 1/A/1820:1822, 1/A/1892:1893, 1/A/1911:1920, 1/A/1954:1959 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7UNV_010 | 1/A/2272:2276, 1/A/2330:2334, 1/A/2357:2359, 1/A/2368:2370 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_7UNV_011 | 1/A/2630:2633, 1/A/2661:2663, 1/A/2718:2722, 1/A/2756:2758 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_7UNV_012 | 1/a/109:116, 1/a/233:234, 1/a/280:283, 1/a/305:306 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_7UNV_013 | 1/a/137:138, 1/a/172:178, 1/a/187:192, 1/a/213:214 | No text annotation | ||
| J4_7UNV_014 | 1/a/569:571, 1/a/758:763, 1/a/804:815, 1/a/873:874 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_7UNV_015 | 1/v/7:10, 1/v/25:27, 1/v/43:49, 1/v/65:66 | No text annotation | homologous J4_6CFJ_015 J4_70449.28 | |
| J5_7UNV_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_7UNV_002 | 1/A/522:524, 1/A/550:554, 1/A/567:569, 1/A/1248:1249, 1/A/2004:2005 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_7UNV_003 | 1/A/574:579, 1/A/658:661, 1/A/799:802, 1/A/1182:1183, 1/A/1237:1243 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_7UNV_004 | 1/A/1664:1672, 1/A/1696:1697, 1/A/1738:1739, 1/A/1743:1751, 1/A/1975:1977 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_7UNV_005 | 1/A/2044:2051, 1/A/2433:2440, 1/A/2487:2494, 1/A/2569:2575, 1/A/2593:2598 | No text annotation | ||
| J5_7UNV_006 | 1/A/2061:2064, 1/A/2230:2233, 1/A/2245:2246, 1/A/2268:2269, 1/A/2414:2422 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_7UNV_007 | 1/a/36:39, 1/a/397:400, 1/a/430:434, 1/a/491:494, 1/a/539:542 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_7UNV_008 | 1/a/36:39, 1/a/397:400, 1/a/430:436, 1/a/486:494, 1/a/539:542 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_7UNV_009 | 1/a/58:61, 1/a/100:107, 1/a/308:310, 1/a/331:333, 1/a/344:348 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_7UNV_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/417:424 | No text annotation | ||
| J6_7UNV_002 | 1/A/2061:2064, 1/A/2230:2233, 1/A/2245:2246, 1/A/2268:2271, 1/A/2371:2382, 1/A/2408:2422 | No text annotation | ||
| J7_7UNV_001 | 1/A/8:15, 1/A/516:522, 1/A/2005:2010, 1/A/2027:2030, 1/A/2612:2617, 1/A/2775:2776, 1/A/2881:2882 | No text annotation | ||
| J7_7UNV_002 | 1/A/807:812, 1/A/825:828, 1/A/930:936, 1/A/961:966, 1/A/977:981, 1/A/1154:1155, 1/A/1172:1177 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7UNV_029 | No text annotation | ||
| J3_7UNV_023 | No text annotation |
Coloring options: