HL_7UNW_076

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUAAAGGC

Length

9 nucleotides

Bulged bases

7UNW|1|a|G|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UNW_076 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1245

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7UNW|1|a|G|253
7UNW|1|a|G|254
7UNW|1|a|U|255
7UNW|1|a|A|256
7UNW|1|a|A|257
7UNW|1|a|A|258
7UNW|1|a|G|259
7UNW|1|a|G|260
7UNW|1|a|C|261

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20