HL_7UOO_007

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7UOO|1|1|G|218, 7UOO|1|1|A|219, 7UOO|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.067

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7UOO|1|1|G|216
7UOO|1|1|U|217
7UOO|1|1|G|218
7UOO|1|1|A|219
7UOO|1|1|G|220
7UOO|1|1|A|221
7UOO|1|1|A|222
7UOO|1|1|U|223
7UOO|1|1|C|224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A