HL_7UOO_021

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7UOO|1|1|A|913, 7UOO|1|1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0872

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UOO|1|1|G|910
7UOO|1|1|C|911
7UOO|1|1|G|912
7UOO|1|1|A|913
7UOO|1|1|A|914
7UOO|1|1|A|915
7UOO|1|1|G|916
7UOO|1|1|A|917
7UOO|1|1|C|918

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain b

Nucleolar GTP-binding protein 1

Chain j

60S ribosomal protein L37-A