HL_7UOO_048

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

A(A2M)GAAAUU

Length

8 nucleotides

Bulged bases

7UOO|1|1|A|2222

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UOO_048 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3656

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UOO|1|1|A|2219
7UOO|1|1|A2M|2220
7UOO|1|1|G|2221
7UOO|1|1|A|2222
7UOO|1|1|A|2223
7UOO|1|1|A|2224
7UOO|1|1|U|2225
7UOO|1|1|U|2226

Current chains

Chain 1

25S rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A