HL_7UPH_012

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7UPH|1|I|U|466

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2814

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7UPH|1|I|G|461
7UPH|1|I|U|462
7UPH|1|I|U|463
7UPH|1|I|A|464
7UPH|1|I|A|465
7UPH|1|I|U|466
7UPH|1|I|A|467
7UPH|1|I|C|468
7UPH|1|I|C|469

Current chains

Chain I

Tethered rRNA

Nearby chains