RNA 3D Hub //

7UPH Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7UPH_0011/I/11:21No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_7UPH_0281/I/1313:1322T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_7UPH_0311/I/1559:1568No text annotation
geometric
HL_5J7L_134
HL_35677.3
HL_7UPH_0321/I/1585:1597No text annotation
HL_7UPH_0331/I/1623:1628No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7UPH_0361/I/1694:1701No text annotation
geometric
HL_5TBW_001
NA
HL_7UPH_0371/I/1725:1730UNCG
geometric
HL_6JQ6_004
HL_34617.5
HL_7UPH_0381/I/1746:1752No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7UPH_0391/I/1805:1812T-loop with 2 stacked bulged bases
geometric
HL_4WF9_010
HL_01609.3
HL_7UPH_0401/I/1819:1823No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7UPH_0411/I/1827:1835T-loop with unstacked turn
geometric
HL_4V9F_012
HL_27670.2
HL_7UPH_0421/I/1881:1893No text annotation
geometric
HL_4WF9_013
HL_69139.1
HL_7UPH_0431/I/1910:1917Pseudoknot geometry
geometric
HL_4GXY_003
HL_65794.5
HL_7UPH_0441/I/1962:1967No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7UPH_0451/I/1987:1993No text annotation
geometric
HL_3IGI_004
HL_04783.2
HL_7UPH_1051/I/2064:2077No text annotation
HL_7UPH_0471/I/2066:2075T-loop with 2 bulged bases not stacked
geometric
HL_3F2X_004
HL_01609.3
HL_7UPH_0481/I/2111:2117No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_7UPH_0491/I/2129:2134GNRA
geometric
HL_5M0J_001
HL_37824.8
HL_7UPH_0521/I/2244:2253No text annotation
geometric
HL_5J7L_155
HL_88205.2
HL_7UPH_1061/I/2279:2285UNCG variation
geometric
HL_7A0S_023
HL_53890.2
HL_7UPH_0541/I/2324:2333No text annotation
HL_7UPH_1081/I/2449:2456GNRA
geometric
HL_5J7L_211
HL_37824.8
HL_7UPH_0571/I/2472:2479No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7UPH_0611/I/2716:2721GNRA
geometric
HL_7A0S_031
HL_37824.8
HL_7UPH_0621/I/2775:2783No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7UPH_0631/I/2818:2824Pseudoknot geometry with 3' bulge
geometric
HL_4V9F_035
HL_57176.2
HL_7UPH_0641/I/2857:2862GNRA
geometric
HL_5J7L_167
HL_37824.8
HL_7UPH_0651/I/2883:2892No text annotation
geometric
HL_4V9F_037
HL_81545.2
HL_7UPH_0691/I/3059:3062Mini UNCG
geometric
HL_7A0S_039
HL_48778.2
HL_7UPH_0701/I/3106:3113No text annotation
geometric
HL_4WF9_038
HL_89567.2
HL_7UPH_0711/I/3124:3130GNRA
geometric
HL_3DIL_003
HL_30068.2
HL_7UPH_0721/I/3185:3190No text annotation
geometric
HL_4V9F_011
HL_75660.5
HL_7UPH_0751/I/3271:3281No text annotation
geometric
HL_4WF9_043
HL_01962.2
HL_7UPH_0761/I/3298:3307No text annotation
HL_7UPH_0791/I/3443:3451No text annotation
geometric
HL_5J7L_182
HL_20167.2
HL_7UPH_0801/I/3521:3530No text annotation
geometric
HL_4WF9_047
HL_61996.3
HL_7UPH_0821/I/3703:3709No text annotation
geometric
HL_5J7L_185
HL_49922.4
HL_7UPH_0831/I/3742:3750No text annotation
geometric
HL_7A0S_052
HL_85367.2
HL_7UPH_0841/I/3758:3770No text annotation
geometric
HL_7RQB_054
NA
HL_7UPH_0871/I/3850:3855GNRA
geometric
HL_4Y1M_002
HL_37824.8
HL_7UPH_0891/I/3898:3907No text annotation
geometric
HL_7RQB_059
NA
HL_7UPH_0921/I/4045:4051No text annotation
geometric
HL_5TBW_063
NA
HL_7UPH_0931/I/4088:4093No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7UPH_1151/I/4195:4200Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_7UPH_0981/I/4313:4321No text annotation
geometric
HL_7A0S_067
HL_64690.6
HL_7UPH_1011/J/85:89Mini UNCG
homologous
HL_5J7L_204
HL_48778.2

Problematic loops

#loop idProblemSequence
HL_7UPH_002No text annotation
HL_7UPH_111No text annotation
HL_7UPH_003GNRA
HL_7UPH_004GNRA
HL_7UPH_005No text annotation
HL_7UPH_006GNRA related
HL_7UPH_007GNRA
HL_7UPH_008No text annotation
HL_7UPH_009UNCG
HL_7UPH_010GNRA
HL_7UPH_011UNCG
HL_7UPH_012GNRA wlth extra near cWW
HL_7UPH_013No text annotation
HL_7UPH_102GNRA variation
HL_7UPH_014GNRA-like with tWH
HL_7UPH_015No text annotation
HL_7UPH_016GNRA
HL_7UPH_017No text annotation
HL_7UPH_018No text annotation
HL_7UPH_112No text annotation
HL_7UPH_019GNRA
HL_7UPH_020GNRA
HL_7UPH_021No text annotation
HL_7UPH_022No text annotation
HL_7UPH_023GNRA
HL_7UPH_024T-loop related
HL_7UPH_103No text annotation
HL_7UPH_025No text annotation
HL_7UPH_026GNRA
HL_7UPH_027No text annotation
HL_7UPH_104No text annotation
HL_7UPH_029No text annotation
HL_7UPH_030No text annotation
HL_7UPH_034No text annotation
HL_7UPH_035No text annotation
HL_7UPH_046No text annotation
HL_7UPH_050No text annotation
HL_7UPH_113No text annotation
HL_7UPH_051GNRA wlth tandem sheared
HL_7UPH_053No text annotation
HL_7UPH_107No text annotation
HL_7UPH_055No text annotation
HL_7UPH_056GNRA with extra cWW
HL_7UPH_058No text annotation
HL_7UPH_059GNRA wlth tandem sheared
HL_7UPH_060No text annotation
HL_7UPH_066Mini UNCG
HL_7UPH_067Mini UNCG
HL_7UPH_068No text annotation
HL_7UPH_073No text annotation
HL_7UPH_074Externally structured
HL_7UPH_077No text annotation
HL_7UPH_078Mini UNCG
HL_7UPH_081No text annotation
HL_7UPH_085No text annotation
HL_7UPH_114No text annotation
HL_7UPH_086No text annotation
HL_7UPH_088No text annotation
HL_7UPH_090No text annotation
HL_7UPH_091No text annotation
HL_7UPH_109Mini UNCG
HL_7UPH_094GNRA
HL_7UPH_095No text annotation
HL_7UPH_096No text annotation
HL_7UPH_097Mini UNCG
HL_7UPH_099No text annotation
HL_7UPH_110No text annotation
HL_7UPH_116No text annotation
HL_7UPH_100No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7UPH_0251/I/568:574,
1/I/879:880		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_7UPH_0261/I/579:583,
1/I/756:760		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_7UPH_0371/I/886:893,
1/I/904:909		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_7UPH_0381/I/921:922,
1/I/1392:1394		Single bulged A
homologous
IL_6CZR_147
NA
IL_7UPH_0551/I/1398:1400,
1/I/4405:4408		No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_7UPH_0561/I/1400:1403,
1/I/4401:4405		No text annotation
geometric
IL_4V88_464
NA
IL_7UPH_0591/I/1415:1418,
1/I/4385:4388		Double sheared
geometric
IL_5J7L_062
IL_09705.15
IL_7UPH_0651/I/1466:1470,
1/I/4337:4340		No text annotation
IL_7UPH_0671/I/1485:1488,
1/I/4300:4305		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_7UPH_0681/I/1524:1530,
1/I/2010:2016		Triple sheared with non-canonical cWW
geometric
IL_7A0S_001
IL_04021.2
IL_7UPH_0691/I/1536:1537,
1/I/1942:1944		Single bulged A
geometric
IL_7A0S_002
IL_31462.7
IL_7UPH_0701/I/1543:1544,
1/I/1934:1936		Minor groove platform
geometric
IL_5J7L_247
IL_51454.3
IL_7UPH_0721/I/1688:1694,
1/I/1701:1708		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_04346.10
IL_7UPH_0731/I/1739:1745,
1/I/1753:1758		No text annotation
geometric
IL_8C3A_065
NA
IL_7UPH_2211/I/1786:1795,
1/I/1843:1854		No text annotation
IL_7UPH_0761/I/1790:1795,
1/I/1843:1850		No text annotation
IL_7UPH_0771/I/1981:1984,
1/I/1996:2009		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_7UPH_1951/I/2036:2039,
1/I/2054:2057		Double sheared
geometric
IL_1SAQ_002
NA
IL_7UPH_0791/I/2064:2066,
1/I/2075:2077		Isolated non-canonical cWW pair
geometric
IL_7A0S_011
IL_07785.1
IL_7UPH_0801/I/2105:2110,
1/I/2118:2123		No text annotation
IL_7UPH_0811/I/2172:2174,
1/I/2306:2308		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7UPH_0821/I/2174:2178,
1/I/2299:2306		tHW-tHW cross-strand stack
geometric
IL_7A0S_015
IL_54041.2
IL_7UPH_0831/I/2197:2198,
1/I/2263:2265		Single bulged A
geometric
IL_4V9F_025
IL_31462.7
IL_7UPH_0841/I/2202:2203,
1/I/2228:2230		Single bulged G
geometric
IL_4WF9_023
IL_00225.14
IL_7UPH_1961/I/2202:2207,
1/I/2224:2230		No text annotation
geometric
IL_4V88_462
NA
IL_7UPH_0861/I/2238:2240,
1/I/2257:2258		Major groove platform
geometric
IL_5J7L_264
IL_48076.6
IL_7UPH_0871/I/2275:2277,
1/I/2287:2291		Multiple bulged bases
geometric
IL_7A0S_021
IL_06549.2
IL_7UPH_0881/I/2344:2347,
1/I/2427:2428		No text annotation
IL_7UPH_1971/I/2344:2348,
1/I/2424:2428		No text annotation
IL_7UPH_0891/I/2347:2348,
1/I/2424:2427		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_7UPH_0901/I/2348:2350,
1/I/2421:2424		No text annotation
geometric
IL_4V84_070
NA
IL_7UPH_0911/I/2356:2362,
1/I/2409:2415		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_7UPH_0971/I/2488:2490,
1/I/2653:2654		Single bulged C
geometric
IL_4WF9_035
IL_61258.15
IL_7UPH_0981/I/2492:2496,
1/I/2647:2651		UAA/GAN
geometric
IL_7A0S_033
IL_38507.2
IL_7UPH_0991/I/2498:2505,
1/I/2644:2645		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_7UPH_1011/I/2512:2518,
1/I/2634:2638		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_7UPH_1021/I/2518:2524,
1/I/2618:2634		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_7UPH_2221/I/2690:2694,
1/I/2739:2744		Partly complementary
geometric
IL_7VYX_008
IL_49751.4
IL_7UPH_1091/I/2696:2701,
1/I/2733:2737		No text annotation
IL_7UPH_1101/I/2702:2709,
1/I/2728:2732		Kink-turn
geometric
IL_5J7L_288
IL_70923.9
IL_7UPH_1111/I/2756:2763,
1/I/3505:3511		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
IL_04346.10
IL_7UPH_1121/I/2804:2807,
1/I/3097:3098		Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_50694.7
IL_7UPH_1131/I/2813:2817,
1/I/2825:2827		Major groove minor groove platform with tHH
geometric
IL_4WF9_050
IL_83150.2
IL_7UPH_1141/I/2845:2849,
1/I/2870:2874		UAA/GAN
geometric
IL_5TBW_048
NA
IL_7UPH_1151/I/2851:2855,
1/I/2864:2868		tSH-tHW-tHS
geometric
IL_4WF9_052
IL_17136.7
IL_7UPH_1181/I/2926:2929,
1/I/3051:3055		Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
IL_58112.2
IL_7UPH_1191/I/2929:2934,
1/I/3045:3051		No text annotation
IL_7UPH_1211/I/2962:2965,
1/I/3014:3018		No text annotation
geometric
IL_5J7L_299
IL_68574.4
IL_7UPH_1251/I/3020:3023,
1/I/3036:3040		UAA/GAN variation
geometric
IL_5J7L_303
IL_23774.1
IL_7UPH_1261/I/3145:3150,
1/I/3498:3500		No text annotation
geometric
IL_5J7L_304
IL_12566.4
IL_7UPH_1271/I/3157:3159,
1/I/3489:3491		Isolated tWW turn
geometric
IL_5J7L_305
IL_67095.2
IL_7UPH_1281/I/3160:3163,
1/I/3487:3488		Major groove platform; stack outside cWW
geometric
IL_4V9F_008
IL_50694.7
IL_7UPH_1291/I/3180:3185,
1/I/3190:3196		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_7UPH_1321/I/3264:3265,
1/I/3474:3476		Single bulged A
geometric
IL_7A0S_064
IL_31462.7
IL_7UPH_1331/I/3292:3298,
1/I/3307:3315		Kink-turn related
geometric
IL_5J7L_313
IL_17069.5
IL_7UPH_1341/I/3331:3334,
1/I/3396:3397		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_7UPH_1351/I/3335:3337,
1/I/3391:3395		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_7UPH_1361/I/3340:3343,
1/I/3387:3388		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_7UPH_2041/I/3345:3354,
1/I/3376:3385		No text annotation
IL_7UPH_1381/I/3427:3428,
1/I/3458:3461		Bulged stacked bases
geometric
IL_7RQB_076
NA
IL_7UPH_1391/I/3428:3439,
1/I/3455:3458		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7UPH_1401/I/3544:3546,
1/I/4111:4112		Major groove platform
geometric
IL_5J7L_320
IL_48076.6
IL_7UPH_1411/I/3548:3550,
1/I/4106:4109		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_7UPH_2061/I/3561:3563,
1/I/3936:3937		Single bulged U
geometric
IL_8VTW_079
NA
IL_7UPH_1441/I/3564:3565,
1/I/3932:3935		Minor groove platform
geometric
IL_7RQB_081
NA
IL_7UPH_1451/I/3575:3577,
1/I/3730:3733		Isolated tHS basepair with bulges
geometric
IL_7A0S_077
IL_85599.2
IL_7UPH_2071/I/3579:3581,
1/I/3726:3728		Isolated non-canonical cWW pair
geometric
IL_8C3A_431
NA
IL_7UPH_2101/I/3696:3698,
1/I/3714:3715		Single bulged U
geometric
IL_5J7L_331
IL_89505.4
IL_7UPH_1561/I/3947:3949,
1/I/3990:3994		No text annotation
IL_7UPH_2261/I/3951:3953,
1/I/3987:3988		Major groove platform
geometric
IL_5J7L_264
IL_48076.6
IL_7UPH_2271/I/3953:3955,
1/I/3983:3987		Major groove minor groove platform with extra cWW
geometric
IL_7A0S_086
IL_51387.3
IL_7UPH_1591/I/3960:3964,
1/I/3974:3978		Double sheared with non-canonical cWW
geometric
IL_5J7L_338
IL_17948.2
IL_7UPH_2121/I/4001:4002,
1/I/4074:4076		Major groove platform
geometric
IL_5J7L_394
IL_07039.3
IL_7UPH_1611/I/4004:4006,
1/I/4068:4072		Isolated non-canonical cWW with bulges
geometric
IL_7A0S_089
IL_07785.1
IL_7UPH_1621/I/4006:4009,
1/I/4063:4068		No text annotation
IL_7UPH_2131/I/4016:4017,
1/I/4034:4037		Major groove platform with intercalation
geometric
IL_7A0S_091
IL_02555.1
IL_7UPH_1651/I/4085:4086,
1/I/4095:4097		Single bulged A
geometric
IL_1DUQ_002
IL_31462.7
IL_7UPH_1661/I/4129:4134,
1/I/4268:4277		No text annotation
IL_7UPH_1681/I/4173:4178,
1/I/4219:4222		No text annotation
IL_7UPH_1691/I/4181:4185,
1/I/4212:4216		UAA/GAN related, with intercalation
geometric
IL_5J7L_348
IL_23774.1
IL_7UPH_2141/I/4189:4190,
1/I/4205:4208		Multiple bulged bases
geometric
IL_5J7L_349
IL_42626.2
IL_7UPH_1711/I/4231:4236,
1/I/4256:4261		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_7UPH_1771/J/70:78,
1/J/96:104		No text annotation

Problematic loops

#loop idProblemSequence
IL_7UPH_001Single bulged G
IL_7UPH_002Single bulged A
IL_7UPH_003No text annotation
IL_7UPH_004Minor groove platform
IL_7UPH_005Multiple bulged bases
IL_7UPH_006Minor groove platform with extra cWW
IL_7UPH_178No text annotation
IL_7UPH_007No text annotation
IL_7UPH_215Minor groove platform
IL_7UPH_008Single bulged G
IL_7UPH_009Isolated non-canonical cWW pair
IL_7UPH_010Minor groove platform related
IL_7UPH_011Isolated cWH basepair
IL_7UPH_012tWH-tWH-tHW-tHW
IL_7UPH_013Kink-turn with non-sequential stacking
IL_7UPH_014No text annotation
IL_7UPH_179No text annotation
IL_7UPH_015C-loop
IL_7UPH_016Single bulged U
IL_7UPH_017No text annotation
IL_7UPH_180C-loop
IL_7UPH_018Single bulged G, near cWW
IL_7UPH_019No text annotation
IL_7UPH_181No text annotation
IL_7UPH_020No text annotation
IL_7UPH_021tSH-tHW-tWW
IL_7UPH_022No text annotation
IL_7UPH_023SSU/LSU pseudoknot
IL_7UPH_024Kink-turn related
IL_7UPH_182No text annotation
IL_7UPH_027Major groove platform
IL_7UPH_028Major groove minor groove platform; mini C-loop
IL_7UPH_029No text annotation
IL_7UPH_030Major groove platform; stack outside cWW
IL_7UPH_183No text annotation
IL_7UPH_031No text annotation
IL_7UPH_032Tandem non-canonical cWW pairs
IL_7UPH_033No text annotation
IL_7UPH_034Kink-turn
IL_7UPH_216Left turn
IL_7UPH_035Other IL
IL_7UPH_036tSH-tHW-tHS
IL_7UPH_039Isolated non-canonical cWW pair
IL_7UPH_184Isolated non-canonical cWW pair
IL_7UPH_040Minor groove platform
IL_7UPH_041No text annotation
IL_7UPH_042Decoding loop related
IL_7UPH_043No text annotation
IL_7UPH_044No text annotation
IL_7UPH_045No text annotation
IL_7UPH_217Isolated cWS basepair
IL_7UPH_046Minor groove platform
IL_7UPH_047Single bulged U
IL_7UPH_048Isolated non-canonical cWW pair
IL_7UPH_185No text annotation
IL_7UPH_049No text annotation
IL_7UPH_218Minor groove platform
IL_7UPH_050No text annotation
IL_7UPH_051No text annotation
IL_7UPH_186No text annotation
IL_7UPH_052180 degree turn
IL_7UPH_053Double sheared with non-canonical cWW
IL_7UPH_187No text annotation
IL_7UPH_054No text annotation
IL_7UPH_188No text annotation
IL_7UPH_189Isolated non-canonical cWW pair
IL_7UPH_057No text annotation
IL_7UPH_219Isolated non-canonical cWW pair
IL_7UPH_190No text annotation
IL_7UPH_058Isolated non-canonical cWW pair
IL_7UPH_060Triple sheared related
IL_7UPH_061Single bulged A
IL_7UPH_191Isolated non-canonical cWW pair
IL_7UPH_062No text annotation
IL_7UPH_063No text annotation
IL_7UPH_064No text annotation
IL_7UPH_192tHS double platform
IL_7UPH_193No text annotation
IL_7UPH_066No text annotation
IL_7UPH_220No text annotation
IL_7UPH_071No text annotation
IL_7UPH_074No text annotation
IL_7UPH_075No text annotation
IL_7UPH_194No text annotation
IL_7UPH_078Double sheared with non-canonical cWW
IL_7UPH_085Triple sheared
IL_7UPH_092Single bulged G
IL_7UPH_093No text annotation
IL_7UPH_094No text annotation
IL_7UPH_198Isolated non-canonical cWW pair
IL_7UPH_095Double sheared with non-canonical cWW
IL_7UPH_096No text annotation
IL_7UPH_100Single bulged U
IL_7UPH_103Isolated non-canonical cWW pair
IL_7UPH_104Tandem non-canonical cWW pairs
IL_7UPH_199No text annotation
IL_7UPH_105No text annotation
IL_7UPH_106No text annotation
IL_7UPH_107Major groove platform with extra cWW
IL_7UPH_200Isolated non-canonical cWW pair
IL_7UPH_108Tandem non-canonical cWW pairs with near WC pairs
IL_7UPH_116No text annotation
IL_7UPH_223No text annotation
IL_7UPH_117UAA/GAN
IL_7UPH_201No text annotation
IL_7UPH_120Single bulged U
IL_7UPH_122No text annotation
IL_7UPH_202No text annotation
IL_7UPH_123No text annotation
IL_7UPH_124No text annotation
IL_7UPH_1306x5 Sarcin-Ricin; G-bulge
IL_7UPH_203Quadruple sheared
IL_7UPH_131No text annotation
IL_7UPH_137No text annotation
IL_7UPH_205UAA/GAN variation
IL_7UPH_142Isolated non-canonical cWW pair
IL_7UPH_143Isolated non-canonical cWW pair
IL_7UPH_146Tandem non-canonical cWW pairs
IL_7UPH_147No text annotation
IL_7UPH_148Single stack bend
IL_7UPH_149Isolated non-canonical cWW pair
IL_7UPH_150Isolated near basepair
IL_7UPH_208Tandem non-canonical cWW pairs
IL_7UPH_151No text annotation
IL_7UPH_209No text annotation
IL_7UPH_224Kink-turn
IL_7UPH_152No text annotation
IL_7UPH_153No text annotation
IL_7UPH_154Double sheared
IL_7UPH_155Isolated non-canonical cWW with bulges
IL_7UPH_225No text annotation
IL_7UPH_157Major groove platform with extra pair
IL_7UPH_158No text annotation
IL_7UPH_211No text annotation
IL_7UPH_160Decoding loop related
IL_7UPH_163No text annotation
IL_7UPH_164Isolated cWS basepair
IL_7UPH_167Sarcin-Ricin target in LSU H95; G-bulge
IL_7UPH_170No text annotation
IL_7UPH_172Single bulged A
IL_7UPH_228No text annotation
IL_7UPH_173Isolated non-canonical cWW pair
IL_7UPH_229No text annotation
IL_7UPH_174No text annotation
IL_7UPH_175No text annotation
IL_7UPH_176No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7UPH_0041/I/825:828,
1/I/856:860,
1/I/867:873		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_7UPH_0121/I/1478:1484,
1/I/4306:4309,
1/I/4325:4330		No text annotation
J3_7UPH_0141/I/1530:1531,
1/I/1974:1981,
1/I/2009:2010		No text annotation
geometric
J3_4V9F_011
J3_60031.2
J3_7UPH_0291/I/1532:1535,
1/I/1945:1961,
1/I/1968:1973		No text annotation
geometric
J3_5J7L_067
J3_30040.2
J3_7UPH_0151/I/1556:1557,
1/I/1570:1576,
1/I/1610:1614		No text annotation
geometric
J3_8C3A_060
NA
J3_7UPH_0161/I/2183:2189,
1/I/2273:2275,
1/I/2291:2294		No text annotation
geometric
J3_5J7L_038
J3_64189.2
J3_7UPH_0171/I/2198:2200,
1/I/2232:2236,
1/I/2260:2263		No text annotation
geometric
J3_7A0S_005
J3_44724.7
J3_7UPH_0191/I/2792:2797,
1/I/3119:3121,
1/I/3133:3136		No text annotation
geometric
J3_5J7L_041
J3_32852.6
J3_7UPH_0201/I/2800:2803,
1/I/3099:3105,
1/I/3114:3116		No text annotation
geometric
J3_8VTW_005
NA
J3_7UPH_0301/I/2838:2843,
1/I/2876:2881,
1/I/2894:2897		No text annotation
J3_7UPH_0311/I/2918:2923,
1/I/3058:3059,
1/I/3062:3068		No text annotation
geometric
J3_5J7L_069
J3_34864.2
J3_7UPH_0211/I/3585:3587,
1/I/3690:3694,
1/I/3717:3722		No text annotation
homologous
J3_7A0S_009
J3_89368.5
J3_7UPH_0321/I/3776:3779,
1/I/3877:3889,
1/I/3915:3921		No text annotation
geometric
J3_4WF9_019
J3_39320.1
J3_7UPH_0331/I/3787:3793,
1/I/3811:3817,
1/I/3826:3833		No text annotation
J3_7UPH_0221/I/3788:3794,
1/I/3810:3817,
1/I/3826:3832		No text annotation
J3_7UPH_0231/I/4011:4014,
1/I/4039:4041,
1/I/4055:4061		No text annotation
geometric
J3_4WF9_009
J3_32601.5
J4_7UPH_0031/I/574:576,
1/I/763:768,
1/I/809:820,
1/I/878:879		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_7UPH_0041/I/1768:1769,
1/I/1870:1875,
1/I/1899:1906,
1/I/1921:1924		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_7UPH_0141/I/1797:1801,
1/I/1816:1819,
1/I/1823:1825,
1/I/1837:1841		No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_7UPH_0061/I/2101:2104,
1/I/2124:2128,
1/I/2135:2138,
1/I/2150:2156		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_7UPH_0071/I/2764:2770,
1/I/2788:2789,
1/I/3139:3142,
1/I/3503:3504		No text annotation
homologous
J4_7A0S_004
J4_64571.5
J4_7UPH_0081/I/2807:2808,
1/I/2832:2837,
1/I/2898:2899,
1/I/3091:3097		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_7UPH_0091/I/2938:2939,
1/I/2960:2965,
1/I/3014:3020,
1/I/3040:3041		No text annotation
J4_7UPH_0101/I/3266:3270,
1/I/3282:3286,
1/I/3321:3324,
1/I/3469:3473		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_7UPH_0111/I/3327:3329,
1/I/3399:3400,
1/I/3418:3427,
1/I/3461:3466		No text annotation
J4_7UPH_0121/I/3779:3783,
1/I/3837:3841,
1/I/3864:3866,
1/I/3875:3877		No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_7UPH_0151/I/4137:4140,
1/I/4168:4170,
1/I/4225:4229,
1/I/4263:4265		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_7UPH_0111/I/1547:1554,
1/I/1616:1621,
1/I/1630:1632,
1/I/1647:1650,
1/I/1676:1678		No text annotation
J5_7UPH_0051/I/2031:2033,
1/I/2060:2064,
1/I/2077:2079,
1/I/2755:2756,
1/I/3511:3512		No text annotation
homologous
J5_4WF9_003
J5_43153.5
J5_7UPH_0061/I/2084:2089,
1/I/2168:2171,
1/I/2309:2312,
1/I/2689:2690,
1/I/2744:2750		No text annotation
homologous
J5_7A0S_004
J5_74302.5
J5_7UPH_0071/I/3160:3176,
1/I/3200:3202,
1/I/3244:3246,
1/I/3250:3258,
1/I/3482:3488		No text annotation
J5_7UPH_0081/I/3163:3176,
1/I/3200:3202,
1/I/3244:3246,
1/I/3250:3258,
1/I/3482:3487		No text annotation
J5_7UPH_0091/I/3551:3558,
1/I/3940:3947,
1/I/3994:4000,
1/I/4077:4082,
1/I/4100:4105		No text annotation
J5_7UPH_0121/I/3568:3571,
1/I/3737:3740,
1/I/3752:3754,
1/I/3774:3776,
1/I/3921:3929		No text annotation
J6_7UPH_0011/I/1545:1546,
1/I/1679:1684,
1/I/1712:1724,
1/I/1731:1735,
1/I/1762:1766,
1/I/1926:1933		No text annotation
J7_7UPH_0011/I/1490:1491,
1/I/1508:1515,
1/I/2025:2031,
1/I/3512:3518,
1/I/3533:3537,
1/I/4119:4124,
1/I/4282:4283		No text annotation
J7_7UPH_0021/I/2317:2322,
1/I/2335:2338,
1/I/2434:2440,
1/I/2465:2470,
1/I/2481:2485,
1/I/2657:2658,
1/I/2679:2684		No text annotation

Problematic loops

#loop idProblemSequence
J3_7UPH_001No text annotation
J3_7UPH_002No text annotation
J3_7UPH_025No text annotation
J3_7UPH_003No text annotation
J3_7UPH_026No text annotation
J3_7UPH_005No text annotation
J3_7UPH_006No text annotation
J3_7UPH_007No text annotation
J3_7UPH_027No text annotation
J3_7UPH_008No text annotation
J3_7UPH_009No text annotation
J3_7UPH_010No text annotation
J3_7UPH_028No text annotation
J3_7UPH_011No text annotation
J3_7UPH_013No text annotation
J3_7UPH_018No text annotation
J3_7UPH_024No text annotation
J4_7UPH_001No text annotation
J4_7UPH_002No text annotation
J4_7UPH_005No text annotation
J4_7UPH_013No text annotation
J5_7UPH_001No text annotation
J5_7UPH_002No text annotation
J5_7UPH_003No text annotation
J5_7UPH_004No text annotation
J5_7UPH_010No text annotation

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