HL_7UPH_016

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_016 not in the Motif Atlas

Homologous match to HL_6CZR_087

Geometric discrepancy: 0.3378

The information below is about HL_6CZR_087

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7UPH|1|I|C|725
7UPH|1|I|G|726
7UPH|1|I|A|727
7UPH|1|I|A|728
7UPH|1|I|G|729
7UPH|1|I|G|730

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain B

30S ribosomal protein S15

Chain H

30S ribosomal protein S21