HL_7UPH_018

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_018 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3402

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|C|838
7UPH|1|I|C|839
7UPH|1|I|C|840
7UPH|1|I|U|841
7UPH|1|I|U|842
7UPH|1|I|G|843
7UPH|1|I|A|844
7UPH|1|I|G|845
7UPH|1|I|G|846

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain W

30S ribosomal protein S2